Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3776 ATGAAGAAGATGAATAATGAGTCCTCAACGCGCACTTACAGTTCTCTCTATTTCAATCCCCTCACCACCACCACCACTGCCAAACCCCACCACACCTTTCTCTTTGACAAGGAAAACTCCAACGCCAATGGCTCCTCTGTTCTACCCAAGCCCAGGCCTTTCAGGTCTCTTTCCACTGACATGATCTTGAAGCCCTGCTCTCTTGAATCCCAGTCTCTGAATCTCAACATTTGGGACTACTCTGACTCCGAATCAGGTCCTGCTTCTTCCTGGTCCACACTGGCCAACAAGTCCTTGATCTGTAGACCCTTGCCTTTAGATATCGGAAGCTGCACTTGCTTTATCGTCAATGAACCACCTCCCCAGGGACTATCAGGTGGCACTTTCTTCTCTCTTTACACCAACGAAGGTCATGGACGCCAGAATAGGAAGCTAGCCGTTGCCCACCATAAGCGCCGCAATGGCAGGTCTCACTTCATCCTAGCTCAGAATCTCAGAGGACTCCTCTCCCATTCAGATGATTCTTTTCTTGGCACCGTAACAGCTAACCTCATCGGCTCTAAATACCACATTTGGGATCAGGGATATCTTCATAATTCCCGTGGTAAACAACCAAAGCCACCTCTTGCTGTTGTCACTTATATTCCTACTGTCACAACATGCACAGGAAGTCACAGAAGCATGAGGGCATATATACCCAAGCATCAAACTATGTCACTCAAGAGCACAACCCAGGTACAACATATAAAAGGATTGCCATTCAATTGGGAGGGAAAACCGGACAAAGTGCATCAACTATTCTCAAAGGTTCCACTTTACAACAAGATTTCAAAGCAATACGAGCTTGACTTTAGAGATAATAAAGGAAAGGCAGGAGGAGGATTTAGAATCCAAAGATCAGTAAAAAATTTCCAGCTGACTTTAGAGGAGAATGGGAGGCAGACGATCCTGCAGCTAGGGAGGGTGGAAAAGTCAAAATTCGTTATGGACTACAGCTATCCTTTGACAGGCTACCAGGCGTTTTGCATATGTTTGGCTTCCATGGATGCAAAACTTTGTTGCACACTCTAG 1071 0.4603 MKKMNNESSTRTYSSLYFNPLTTTTTAKPHHTFLFDKENSNANGSSVLPKPRPFRSLSTDMILKPCSLESQSLNLNIWDYSDSESGPASSWSTLANKSLICRPLPLDIGSCTCFIVNEPPPQGLSGGTFFSLYTNEGHGRQNRKLAVAHHKRRNGRSHFILAQNLRGLLSHSDDSFLGTVTANLIGSKYHIWDQGYLHNSRGKQPKPPLAVVTYIPTVTTCTGSHRSMRAYIPKHQTMSLKSTTQVQHIKGLPFNWEGKPDKVHQLFSKVPLYNKISKQYELDFRDNKGKAGGGFRIQRSVKNFQLTLEENGRQTILQLGRVEKSKFVMDYSYPLTGYQAFCICLASMDAKLCCTL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3776 356 SUPERFAMILY Tubby C-terminal domain-like 88 355 IPR025659 -
Gso11g3776 356 PANTHER TUBBY-RELATED 70 354 - -
Gso11g3776 356 PRINTS Tubby superfamily signature 176 200 IPR000007 -
Gso11g3776 356 PRINTS Tubby superfamily signature 292 308 IPR000007 -
Gso11g3776 356 PRINTS Tubby superfamily signature 312 331 IPR000007 -
Gso11g3776 356 PRINTS Tubby superfamily signature 333 355 IPR000007 -
Gso11g3776 356 PANTHER TUBBY-LIKE PROTEIN 8 70 354 - -
Gso11g3776 356 Pfam Tub family 102 349 IPR000007 -
Gso11g3776 356 Gene3D Tubby Protein; Chain A 91 355 IPR025659 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3776 67 246 TUB Transcription Factor Family AT1G16070 56.906 2.17e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso11g3776 Tub 4.1e-39 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3776 K19600 - gmx:100803500 731.865