Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3757 ATGGACCTTATATGGCCAGAGTCACGTCCATCTGAAAATCTGAAGATCCCATTTTTAGAGACTCCACCTCCATGCTCAAAGCCGCCAGTACCTTCCATGGATACCCAGAAGGAGAAGAAGGAGGACAATGAACACCCCCATGAGTCTGCTTCAGACCTTGTACTGGATCTAAGTCTCCCTAGTAAACATTCAGGTGGTGATGGTGAGTCAAAGCCAGAACTCAACCTCATCAACTGTATCGATACAAATTTGTCCATGAACTCCTCAGAATCAAGTCATGGACATGGTGATGAATTGGAGCCCCGGATATTCTCATGCAACTACTGTCAAAGGAAGTTTTATAGCTCGCAGGCACTTGGGGGACACCAGAATGCGCATAAGCGTGAAAGAACATTGGTCAAAAGAGGACACAAAGCTGGTGCTGCAGTTTCCATAGATTTTGCACGGAGGTACTCCAGCATGGCTTCTTTGCCTTTGCATGGTTCCTATAACAGGTCATCACTCGGAATTCAGGCGCATTCTATGATCAGCAAACCCTCTTATCAATCACCCTTTTTTGGTTTGTCCCGTTCTCATGCTCAGAAGCGGCCTATGTTCTCACAACCGCCAATTGGGACAGAAAGTGAATCTTCTTTGACTGGTGGCATCCCAGTCCCACGGTTAGGGAATTTTTCTCCGAGGCTGGTGCCAGAGGGACTCGGAGGTTACTGGTTGGATAGTGTTAACCATTTGAAGACTAAACAAGAGGAGTTGCACAAGCTTGACTTGTCCCTCAAACTCTAA 783 0.4674 MDLIWPESRPSENLKIPFLETPPPCSKPPVPSMDTQKEKKEDNEHPHESASDLVLDLSLPSKHSGGDGESKPELNLINCIDTNLSMNSSESSHGHGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLVKRGHKAGAAVSIDFARRYSSMASLPLHGSYNRSSLGIQAHSMISKPSYQSPFFGLSRSHAQKRPMFSQPPIGTESESSLTGGIPVPRLGNFSPRLVPEGLGGYWLDSVNHLKTKQEELHKLDLSLKL* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3757 260 MobiDBLite consensus disorder prediction 33 51 - -
Gso11g3757 260 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Gso11g3757 260 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 36 260 IPR044246 GO:0009788
Gso11g3757 260 MobiDBLite consensus disorder prediction 1 53 - -
Gso11g3757 260 Gene3D Classic Zinc Finger 82 151 - -
Gso11g3757 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Gso11g3757 260 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 36 260 - -
Gso11g3757 260 SUPERFAMILY beta-beta-alpha zinc fingers 101 131 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3757 Gso-Chr11 53178146 53179368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3757 31 260 C2H2 Transcription Factor Family AT1G80730 42.339 4.70e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g3757 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3757 - - gmx:100812573 529.635