Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3756 ATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTTTCTGAAATTCGCCACCCTCTTTTGAAGACTAGAATATGGCTGGGAACGTTTGAAACCGCAGAGGATGCAGCTAGAGCGTACGATGAAGCGGCAAGGTTGATGTGTGGGCCAAAAGCACGCACCAATTTCCCTTACAATCCCAATGAGCCACTTTCATCTTCATCGAAGCTCCTCTCTGCTACTCTGACTGCGAAGCTACACAAGTGTCACATGGCCTCTCTTTCCCTTCAAATGAGCAAGCAGAAACAATCTCAGACAGAGCCTCATCAAGGATCATCCAGCGACTCAGGCAATGCCATTGCGGGAACAAGTTCAGACAACACCGGCTTTAGATGGCCAGAAGAGGAAGCACAAGTTGAAGTGCCACCAGCACAACAGCAACAATTTCAGCCAGTTCTTCAAGATGATCACATTGAACAGATGATACAGGAGCTGCTTGATTATGGCTCAATGGAGCTTAGTTTTGTTGACTCAGCCTAA 540 0.4889 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEPLSSSSKLLSATLTAKLHKCHMASLSLQMSKQKQSQTEPHQGSSSDSGNAIAGTSSDNTGFRWPEEEAQVEVPPAQQQQFQPVLQDDHIEQMIQELLDYGSMELSFVDSA* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3756 179 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Gso11g3756 179 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Gso11g3756 179 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Gso11g3756 179 PANTHER ETHYLENE RESPONSE FACTOR 1 175 - -
Gso11g3756 179 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Gso11g3756 179 MobiDBLite consensus disorder prediction 96 149 - -
Gso11g3756 179 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Gso11g3756 179 MobiDBLite consensus disorder prediction 96 131 - -
Gso11g3756 179 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Gso11g3756 179 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Gso11g3756 179 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Gso11g3756 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3756 Gso-Chr11 53159753 53160771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3756 1 176 AP2-EREBP Transcription Factor Family AT5G25190 66.484 1.62e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso11g3756 AP2 7.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3756 - - gsj:114375612 309.686