Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3754 ATGAATCTTCTTGTTCTCTTCCTGCCTGTTTGGGTGCTAAGCATTTCTTTTTCCTCACCAATTCTTCATGCTGCTTCCTCCATTTCTCTTTCTCAAAATGCACAAGCTGAATCTCCAGGAATTCAGGAGGTTAGAACAGTGCACCACCAGAATTTGAATAAGAGAATTCTAATCGCACTAGTTGCTTGTTCTGCTCTTCTTGTTGGAGTCTTCCTATTCCTGTTATATGTCTGGTTCGGTCGACATAAAAACTTAAGATGCTCCAAAAGTAAAAGCCAAGAAACCATCGAGGCTGCAAAAGGGGAAACCATAAGCTCGGTTAATGCTAAACTTAACTACTCTAAGATGGCAGATAAAAAGAGTTCAGTTGCTATTTTTGACTATCAGCTGTTAGAGGCTGCAACAAACAGCTTTAACACAAGTAATATTATGGGAGAGAGTGGTTCTAGAATTGTTTACAGAGCTCATTTTGATGAACATTTCCAGGCAGCTGTTAAGAAAGCAGATAGTGACGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATACAGCATCAGAATATCATAAAAATGATGGGTTATTGCATTCATGGTGAATCGAGGTTTCTTGTTTATGAATTGATGGAGAATGGATCTCTGGAAACTCAATTACATGGGCCTAATCGGGGGTCATCTTTAACTTGGCCTCTAAGGTTAAGAATTGCTGTTGATGTTGCCAGAGCACTAGAATATCTCCACGAGCACAACAATCCTCCTGTGGTTCATAGAGACCTAAAATCGTCTAATGTTTTTCTGGATTCTAACTTTAATGCCAAGTTATCAGATTTTGGATTTGCTATGGTTTTGGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTAGGATATTTGGCTCCTGAGTACATATCGCATGGTAAACTAACTGATAAGAGCGATGTCTATGCTTTTGGGGTTGTCCTTCTAGAGCTCCTAACCGGAAAAAAACCCATGGAAAACATGACCTCGAACCAATATCAATCCCTTGTATCATGGGCCATGCCTCAGCTAACCGACAGATCAAAGCTTCCAAGTATTCTGGATCCTGTTATCAGAGACACAATGGATTTGAAGCATTTGTATCAGGTTGCTGCAGTGGCTGTACTCTGTGTGCAATCAGAACCAAGTTATAGGCCACTAATAACTGATGTGTTGCACTCTCTTATCCCTTTGGTACCAGTTGAGCTTGGAGGGTCACTAAGAGTTACAGAACCAATCAGCTCATAG 1275 0.4047 MNLLVLFLPVWVLSISFSSPILHAASSISLSQNAQAESPGIQEVRTVHHQNLNKRILIALVACSALLVGVFLFLLYVWFGRHKNLRCSKSKSQETIEAAKGETISSVNAKLNYSKMADKKSSVAIFDYQLLEAATNSFNTSNIMGESGSRIVYRAHFDEHFQAAVKKADSDADREFENEVSWLSKIQHQNIIKMMGYCIHGESRFLVYELMENGSLETQLHGPNRGSSLTWPLRLRIAVDVARALEYLHEHNNPPVVHRDLKSSNVFLDSNFNAKLSDFGFAMVLGMQHKNMKMSGTLGYLAPEYISHGKLTDKSDVYAFGVVLLELLTGKKPMENMTSNQYQSLVSWAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPISS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3754 424 Gene3D Phosphorylase Kinase; domain 1 98 210 - -
Gso11g3754 424 SUPERFAMILY Protein kinase-like (PK-like) 114 404 IPR011009 -
Gso11g3754 424 ProSiteProfiles Protein kinase domain profile. 138 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3754 424 PANTHER RECEPTOR-LIKE KINASE 24 419 - -
Gso11g3754 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Gso11g3754 424 Pfam Protein kinase domain 143 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3754 424 SMART serkin_6 138 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3754 424 PANTHER OS01G0253100 PROTEIN 24 419 IPR045271 GO:0004714|GO:0006468
Gso11g3754 424 Gene3D Transferase(Phosphotransferase) domain 1 211 409 - -
Gso11g3754 424 CDD STKc_IRAK 144 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3754 Gso-Chr11 53144136 53147976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3754 1 350 Receptor kinase-like Gene Family AT1G80640 46.216 3.58e-108 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Gso11g3754 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3754 - - gmx:100811491 832.402