Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3751 ATGGAGCAATCATGGGAGAATTGGCCTCTTGATATGGGAATGGAGGAAGACAGGGATCTGAGGGATGAGGAGGAGTTCCTGAGAAACATCCTCAGTGAACCTTCTGAGAGTGAGATGGTAACCGTTGGGTCAGCCAAAAGGCCTCCGAGGACATACATTTTGTCTTTTGATAACTCCACCATAATACCAGCTACTCCTGAACCCACTTCCAGAAAACGCACACGCCAGCCACAAAATCTCAACTTAGAACCAATTAAACCAAACCCCAACACCCAGCCTGGAAAGAGGGGTAGAAGCTGTTCCCAGACTCTGGATCACATTATGGCCGAAAGAAAAAGGAGACAGGAACTCACCCAGAAGTTCATTGCTCTTTCAGCCACTATCCCTGGCTTGAAGAAGACGGACAAGAGTTCTATACTTGGCGAAGCAATTGATTACGTGAAACAACTTCAAGAACGCGTGACGGAGCTTGAACAGAGAAACATGAGAGGGAAAGAATCAATGATAATCCTCAAGAAGAGTGAAGTGTGTAACTCAAGTGAAACAAATTCTGAGGATTGCTGTAGAGCCAGCGAAATGCTCCCTGATGTTGAAGCAAGAGTGATGGAGAATGAGGTACTCATTGAGATCCATTGCGAGAAGGAAGATGGGGTTGAGCTCAAAATATTGGACCACCTTGAAAATCTTCAACTCTGTGTCACCGCCAGCAGCGTATTGCCCTTTGGGAATTCAACTCTTGGTATTACTATTATCGCTCAGATGGGTGACGCGTACAAAATGAAGGTGAATGATCTAGTCCCAAAACTAAGACAAGTGCTGTTGAATCGCATGAACGTCAATACCGATCCGTACTAG 855 0.455 MEQSWENWPLDMGMEEDRDLRDEEEFLRNILSEPSESEMVTVGSAKRPPRTYILSFDNSTIIPATPEPTSRKRTRQPQNLNLEPIKPNPNTQPGKRGRSCSQTLDHIMAERKRRQELTQKFIALSATIPGLKKTDKSSILGEAIDYVKQLQERVTELEQRNMRGKESMIILKKSEVCNSSETNSEDCCRASEMLPDVEARVMENEVLIEIHCEKEDGVELKILDHLENLQLCVTASSVLPFGNSTLGITIIAQMGDAYKMKVNDLVPKLRQVLLNRMNVNTDPY* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3751 284 Pfam Helix-loop-helix DNA-binding domain 106 151 IPR011598 GO:0046983
Gso11g3751 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 103 168 IPR036638 GO:0046983
Gso11g3751 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 150 IPR011598 GO:0046983
Gso11g3751 284 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 279 - -
Gso11g3751 284 MobiDBLite consensus disorder prediction 1 21 - -
Gso11g3751 284 SMART finulus 107 156 IPR011598 GO:0046983
Gso11g3751 284 PANTHER BHLH TRANSCRIPTION FACTOR 1 279 - -
Gso11g3751 284 Coils Coil 140 167 - -
Gso11g3751 284 MobiDBLite consensus disorder prediction 57 99 - -
Gso11g3751 284 MobiDBLite consensus disorder prediction 57 100 - -
Gso11g3751 284 Gene3D - 101 173 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3751 Gso-Chr11 53106259 53110619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3751 91 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.368 2.09e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g3751 HLH 3.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3751 - - gmx:100809888 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1793 8 17548673 17551702 Gso11g3751 11 53106259 53110619 PCT