Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3750 ATGGACGATTGGTTATCTGATCTGGATATGGGCGGCGACATCTCCTTCTTCAGTGAAGAGCATCCAAATCCAACCTTGTACTGTGTTGCAAATGAAACACATGTACAAACAGGAGCAAAGAGGGGTAGAAGCTCTTGGGAGACACCCACACGGGATCACATTATGTCCGAGAGAAAAAGGAGACAGCTAATGGCAGAGAGATTCATAGCGCTTTCAGCTATTATACCTGGCTTGAAGAAGATAGACAAGGCCTCTGTACTGAGTGAAGCTATTAATTACGTGAAACAACTTAAAGGACGCATAGCTGTGCTGGAGCAAGAGAGTAGCAACAAGAAGTCGATGATGATCTTTACTAAGAAGTGCCTCCAATCTCATCCTCATTGTGAAAAAAACTCTAATCACGTGCTCCCTCAACTCCAAGTCGAAGCAATAGGTCTAGAGTTAGAGAGGGAAGTACTTATTAGAATCCTTTGTGAGAAACCAAAGGGCATCTTCCTCAAACTACTCACCTTACTTGAAAATATGCATCTTTCTATTGTCAGTAGCAACGTCCTGCCACTTGGAAAAAATACTCTCAACATCACCATTATTGCTCAGATGGGTGAGGAATACAACATGACGGGGGATGAATTGATGAGCAAACTGACGCAGGATCTTTTCAAGTTATATGAAGTGCCTCAGTGA 684 0.4284 MDDWLSDLDMGGDISFFSEEHPNPTLYCVANETHVQTGAKRGRSSWETPTRDHIMSERKRRQLMAERFIALSAIIPGLKKIDKASVLSEAINYVKQLKGRIAVLEQESSNKKSMMIFTKKCLQSHPHCEKNSNHVLPQLQVEAIGLELEREVLIRILCEKPKGIFLKLLTLLENMHLSIVSSNVLPLGKNTLNITIIAQMGEEYNMTGDELMSKLTQDLFKLYEVPQ* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3750 227 Coils Coil 87 107 - -
Gso11g3750 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 115 IPR036638 GO:0046983
Gso11g3750 227 SMART finulus 54 103 IPR011598 GO:0046983
Gso11g3750 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Gso11g3750 227 Pfam Helix-loop-helix DNA-binding domain 53 98 IPR011598 GO:0046983
Gso11g3750 227 Gene3D - 47 120 IPR036638 GO:0046983
Gso11g3750 227 PANTHER BHLH TRANSCRIPTION FACTOR 1 225 - -
Gso11g3750 227 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3750 Gso-Chr11 53098143 53101139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3750 35 200 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22760 38.122 4.01e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g3750 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3750 - - gmx:100809351 426.017