Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3749 ATGGAGGAGAATCCGTGGGGAAGTTGGTCTTCCAATATGGAAATGGATGACGAGGATGTGAATGAAAGTTTGCGCGAGACGAACCAGTTTGATGAAGAGTTCCTAAGAGATATTCTGCAGCAGCCAGAAGAGGGCAGTGAAGATCTGAAAAACTCATCGATCATGTCGTCTCTATTTCCAACAACTTATATACTGTCCTTCGACAAATCCGCTGCTGAATTGTTACCAACTGAAACTGATCATCGTGATTATTCTTCTTCCCAATTGCCCTCATCATCAAATTCAAGGGCCAACCATGGAACCAACAAGAAGCCTCGAAGCGCTTCGGAGTCACTGGATCACATCATGTCAGAGAGAAATAGGAGACAGGAGCTCACCAGCAAATTCATTGCACTTGCTGCCACTATCCCTGGCTTGAAGAAGATGGACAAGGCGCATGTACTGAGAGAAGCTATCAATTACGTGAAACAACTACAAGAACGTATAGAAGAGCTAGAAGAAGATATCCGAAAGAACGGTGTAGAATCAGCGATAACCATAATAAGATCTCATCTCTGCATTGATGATGACTCGAACACTGACGAAGAATGCTATGGGCCCAATGAAGCACTTCCTGAAGTTGAAGCAAGAGTCTTAGGAAAGGAAGTGTTAATCAAAATTTACTGTGGTAAACAAAAGGGAATTCTGCTTAAAATAATGTCTCAGCTCGAACGTCTTCATCTCTACATATCCACTAGCAATGTCTTGCCCTTTGGGAATACCCTTGACATCACCATTACTGCTCAGATGGGTGACAAATACAACTTGGTAGTGAACGATCTAGTGAAAGAACTGAGACAAGTGGCTATGATGAAGTCATGTGATGTGCAACAATGA 876 0.4269 MEENPWGSWSSNMEMDDEDVNESLRETNQFDEEFLRDILQQPEEGSEDLKNSSIMSSLFPTTYILSFDKSAAELLPTETDHRDYSSSQLPSSSNSRANHGTNKKPRSASESLDHIMSERNRRQELTSKFIALAATIPGLKKMDKAHVLREAINYVKQLQERIEELEEDIRKNGVESAITIIRSHLCIDDDSNTDEECYGPNEALPEVEARVLGKEVLIKIYCGKQKGILLKIMSQLERLHLYISTSNVLPFGNTLDITITAQMGDKYNLVVNDLVKELRQVAMMKSCDVQQ* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3749 291 MobiDBLite consensus disorder prediction 81 105 - -
Gso11g3749 291 MobiDBLite consensus disorder prediction 1 24 - -
Gso11g3749 291 SMART finulus 115 164 IPR011598 GO:0046983
Gso11g3749 291 PANTHER BHLH TRANSCRIPTION FACTOR 18 289 - -
Gso11g3749 291 Pfam Helix-loop-helix DNA-binding domain 114 159 IPR011598 GO:0046983
Gso11g3749 291 Coils Coil 148 175 - -
Gso11g3749 291 Gene3D - 89 173 IPR036638 GO:0046983
Gso11g3749 291 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 18 289 - -
Gso11g3749 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 114 175 IPR036638 GO:0046983
Gso11g3749 291 MobiDBLite consensus disorder prediction 79 112 - -
Gso11g3749 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 158 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3749 Gso-Chr11 53085949 53090050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3749 106 279 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.191 2.12e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g3749 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3749 - - gmx:100795184 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3749 11 53085949 53090050 Gso8g1793 8 17548673 17551702 PCT
Gso8g1791 8 17530411 17536111 Gso11g3749 11 53085949 53090050 PCT