Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3728 ATGGCTTTTTGCCCAATTTTTTGTTGCGGAAATGGTTCGGATCGCAAAGGACGAGGGAAGAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACACTCCGCTACTAATAATTTCAACTATGATAACAAACTTGGCGAAGGGGGATTCGGCAGTGTGTACTGGGGCCAGCTCTGGGATGGATCGCAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATGTTGGCTAGAGTACGACACAAGAATCTTCTCAGTCTACGTGGCTATTGTGCTGAAGGTCAGGAACGGTTAATTGTGTACGATTATATGCCAAATTTGAGCCTGCTCTCTCATCTTCATGGACAGCACTCAGCAGAATCCCTTCTTGATTGGAACCGGCGGATGAATATCGCAATTGGGTCTGCTGAGGGAATTGCATATCTTCACCACCAGTCAACGCCACACATCATCCACAGAGATATCAAGGCAAGCAACGTGTTGTTGGATTCGGATTTTCAGGCACGGGTTGCTGATTTTGGTTTTGCCAAGTTGATCCCTGATGGGGCAACACATGTGACTACAAGAGTTAAGGGCACCCTAGGCTACCTTGCACCAGAATATGCTATGTTAGGTAAAGCAAATGAGAGTTGTGATGTCTACAGTTTTGGAATTCTCCTTCTAGAACTTGCTAGTGGCAAAAAACCACTTGAGAAACTTAGTTCTGCAGTGAAGCGATCAATAAATGATTGGGCGCTGCCATTGGCTTGTGAGAAGAAATTCAGTGAACTGGCAGATCCAAAACTTGAGGGTAACTATGCGGAGGAAGAGCTTAAAAGAGTGGTTTTAATTGCTCTTTTATGTGCTCAGAGTCAGGCAGAGAAGAGACCCACCATACTCGAGGTAGTAGAGCTACTAAAGGGAGAATCCAAAGATAAGTTGGCTCAGTTGGAAAATAATGAACTCTTTCAGAACCCTCCAGCTGTAGGACATACTGATGATGGGACCGTTGCTGCTGAAGGCAGTTCAGATTTCATCTCAGAAGAGAAGGAATCAAAACATGAGTTGGAAGAGAATACTGAGCCATAA 1104 0.4429 MAFCPIFCCGNGSDRKGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEMLARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAESLLDWNRRMNIAIGSAEGIAYLHHQSTPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPLEKLSSAVKRSINDWALPLACEKKFSELADPKLEGNYAEEELKRVVLIALLCAQSQAEKRPTILEVVELLKGESKDKLAQLENNELFQNPPAVGHTDDGTVAAEGSSDFISEEKESKHELEENTEP* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3728 367 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3728 367 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Gso11g3728 367 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Gso11g3728 367 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3728 367 PANTHER BNAA05G14800D PROTEIN 1 364 - -
Gso11g3728 367 MobiDBLite consensus disorder prediction 326 367 - -
Gso11g3728 367 MobiDBLite consensus disorder prediction 349 367 - -
Gso11g3728 367 Coils Coil 305 325 - -
Gso11g3728 367 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Gso11g3728 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Gso11g3728 367 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3728 367 PANTHER OS01G0750732 PROTEIN 1 364 - -
Gso11g3728 367 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Gso11g3728 367 CDD STKc_IRAK 46 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3728 Gso-Chr11 52872519 52875525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3728 28 314 Trihelix Transcription Factor Family AT1G70460 50.515 4.11e-94 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gso11g3728 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3728 - - gmx:100788153 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0069 15 588821 591821 Gso11g3728 11 52872519 52875525 GST
Gso11g3728 11 52872519 52875525 Gso8g1774 8 17285876 17289889 PCT
Gso8g1774 8 17285876 17289889 Gso11g3728 11 52872519 52875525 PCT