Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3707 ATGGAGGCACAAAGTCATGGTTTCAACGCAGAATCATCAGATAGTAACAAGCTGATGGTGAAGACAGAGATGTGCAGGAGATTCAGAAGGGGCGTGTGCGTTCATGGATCGAAATGCATATACGCACACAGCGTTGCGGAGCTCAGACTACAACGCCAACCCAAACAATGCAGATTCTTCCTTCAAAACAAACGCTGCCACTATGGACGCACCTGTCGTTTCCTCCATTCATCCACACCACTCAACCCAAACCCGCAACCAGAAGTAGGGAAACTTGATCGCTACTCTTCTCCAGAATCCAAGAGAATGCGAACTTGTGCAGCTGCTCCAAGTGATGATGGCTGCTCTTCTGCAGAACAAAGGATAATGCAAACTTCTGCTGCTGCTGATGCTGCTACAAATGCTTCAACTAGCACTGTGGCAACTAAGAATGAACCATCATATCCTGTTAAGTTCATTTTCAAAAACAATGATCTACAAAGGATCAGTCGCATCTATGCTGATTGGATTTGA 513 0.4561 MEAQSHGFNAESSDSNKLMVKTEMCRRFRRGVCVHGSKCIYAHSVAELRLQRQPKQCRFFLQNKRCHYGRTCRFLHSSTPLNPNPQPEVGKLDRYSSPESKRMRTCAAAPSDDGCSSAEQRIMQTSAAADAATNASTSTVATKNEPSYPVKFIFKNNDLQRISRIYADWI* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3707 170 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 6 169 - -
Gso11g3707 170 Gene3D - 50 122 - -
Gso11g3707 170 PANTHER CCCH ZINC FINGER/TIS11-RELATED 6 169 IPR045877 GO:0003729
Gso11g3707 170 Gene3D - 12 49 - -
Gso11g3707 170 ProSiteProfiles Zinc finger C3H1-type profile. 51 79 IPR000571 GO:0046872
Gso11g3707 170 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 77 IPR000571 GO:0046872
Gso11g3707 170 SUPERFAMILY CCCH zinc finger 53 81 IPR036855 GO:0046872
Gso11g3707 170 SUPERFAMILY CCCH zinc finger 18 49 IPR036855 GO:0046872
Gso11g3707 170 SMART c3hfinal6 51 78 IPR000571 GO:0046872
Gso11g3707 170 SMART c3hfinal6 19 45 IPR000571 GO:0046872
Gso11g3707 170 ProSiteProfiles Zinc finger C3H1-type profile. 19 46 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3707 Gso-Chr11 52707699 52710054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3707 16 77 C3H Transcription Factor Family AT1G68200 39.706 6.70e-09 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso11g3707 zf-CCCH 4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3707 K18753 - gmx:102663279 339.732