Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3687 ATGTCCTCCCAATCTGACGCCGTTGGCTGTAACTTGAAGGAGACGGAGCTCACCTTAGGCCTTCCCGGCACCAAAACTAATGGCACAAAACGTGGCTTCTCCGACACCCTTAACACTTCTCAAAATAAAATGTTGCGCCCCACCTCCAAGGAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCAAGCAGGAAAAATGCTATGAAGATGAGTTGCAAGTTGGTGAAGGTGGCGGTGGATGGAGCTCCTTATCTAAGAAAAGTGGATCTTGAAATGTACGAGACTTATGAGCATTTGATGAGGGAATTAGAGACCATGTTTTGTGGCTTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGAGTCTGGAAATGGGATTGAATACATGCCCACCTATGAGGACAAAGATGGTGACTGGATGTTGGTCGGGGATGTACCCTGGAAGATGTTTGTTGAATCATGCAAGAGGATAAGACTTATGATTAGCTCAGAGGCCGTTGGTTTAGGTCCGAGGTCTACTTCTTCAAAATGTACGGGTTCCACCTAG 552 0.4728 MSSQSDAVGCNLKETELTLGLPGTKTNGTKRGFSDTLNTSQNKMLRPTSKEQVVGWPPVRASRKNAMKMSCKLVKVAVDGAPYLRKVDLEMYETYEHLMRELETMFCGLAIRNHLMNERKLMESGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEAVGLGPRSTSSKCTGST* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3687 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 168 IPR003311 GO:0005634|GO:0006355
Gso11g3687 183 ProSiteProfiles PB1 domain profile. 71 166 IPR000270 GO:0005515
Gso11g3687 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 3 168 - -
Gso11g3687 183 SUPERFAMILY CAD & PB1 domains 72 163 - -
Gso11g3687 183 Pfam AUX/IAA family 70 173 IPR033389 -
Gso11g3687 183 MobiDBLite consensus disorder prediction 19 40 - -
Gso11g3687 183 Gene3D - 65 176 - -
Gso11g3687 183 MobiDBLite consensus disorder prediction 20 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3687 Gso-Chr11 52505777 52507499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3687 58 167 B3 DNA Binding Superfamily AT3G61830 30.909 2.45e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso11g3687 AUX_IAA 7.8e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3687 K14484 - gmx:100500488 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0117 15 1007269 1009002 Gso11g3687 11 52505777 52507499 GST