Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3686 ATGGAGAAAGAAGCTGTTGGCCTTGAAATCACTACTGAGCTAAGGTTGGGCCTTCCCGGTGGGGAATTACCTGACAAGAACGAGAAGATAAAGAAGAGGGTGTTCTCCGATATTCAAGCTCATGATGATGATGAAAACAGTTCCTCCGAACAAGACCGCAAAATCCAAACCAAGAATCAAGTGGTGGGGTGGCCTCCGGTGTGTTCGTACCGCAAGAAGAACACCGTCAATGAAACCAAAATGTACGTCAAAGTTAGCATGGACGGGGCTCCTTTCTTGCGTAAAATTGATTTAGCTATGCACAAGGGATATTCGGAGCTGGTCTTGGCCTTGGAGAAGTTCTTCGGTTGCTATGGAATTCGCGAAGCGTTGAAGGATGCGGAGAATGCTGAACACGTTCCCATATACGAGGACAAAGATGGTGACTGGATGCTCGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCAAAAGGGTCTTTAAAAGGATTTATAGAAGGCGTAACAAAATGA 570 0.4579 MEKEAVGLEITTELRLGLPGGELPDKNEKIKKRVFSDIQAHDDDENSSSEQDRKIQTKNQVVGWPPVCSYRKKNTVNETKMYVKVSMDGAPFLRKIDLAMHKGYSELVLALEKFFGCYGIREALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVTK* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3686 189 MobiDBLite consensus disorder prediction 36 52 - -
Gso11g3686 189 Pfam AUX/IAA family 29 171 IPR033389 -
Gso11g3686 189 SUPERFAMILY CAD & PB1 domains 74 165 - -
Gso11g3686 189 PANTHER AUXIN-RESPONSIVE PROTEIN 6 173 - -
Gso11g3686 189 ProSiteProfiles PB1 domain profile. 80 168 IPR000270 GO:0005515
Gso11g3686 189 Gene3D - 74 177 - -
Gso11g3686 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 173 IPR003311 GO:0005634|GO:0006355
Gso11g3686 189 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3686 Gso-Chr11 52494283 52497500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3686 77 187 B3 DNA Binding Superfamily AT4G23980 35.135 2.43e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso11g3686 AUX_IAA 2e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3686 K14484 - gmx:100305535 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0118 15 1016947 1020568 Gso11g3686 11 52494283 52497500 GST
Gso8g1728 8 16884004 16888296 Gso11g3686 11 52494283 52497500 PCT