Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3653 ATGGGCGCCGACATGTCCAACAATAATAATCCTCCTCCCACTTCTCACGCCAAAGACTTGTTTGCTTCTCCAGCTCTCTCTCTCAGCCTCGCTGGCATTTTTCGCCATGCTGGGGTGGCCGCGGCTGATGAGGCTGCCACTTCTGTGGAGGAGGGCGAAGAAGGGAGTGGAGGAGCTGCTGAGAGGTTAGAGGAGATTAGCAGCGAGAACTCCGGCCCCACGAGATCCAGATCAGAGGATGACTTCGAAGGAGGAGAAGCTGAACCTGAAGATGATGACGATGCCCATGGAGACAACAAGAACAAGAAGACGAAGAAGAAGAGGAAGAAATATCACAGGCACACTGCTGACCAGATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTAAGCAAGCAATTAGGCCTTGCCCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAATTCTTTGTTGAAGTCAGAAATAGAGAAACTAAAGGAGAAAAATAAGAGCTTACGAGAGACCATAAACAAAGCTTGTTGCCCCAACTGTGGCGTGCCCACCACAAGCAGAGATGGTGTCATGCCAACTGAAGAACAACAACTACGTATTGAAAATGCCAAACTAAAAGCTGAGGTAGAGAAACTCCGAGCAGCTTTAGGGAAATACGCACCAGGGTCAACGTCCCCTTCATGTTCTTCTGGCCATGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTTGGACTTGATAAGTCAAGGATAATGGACATAGTAAACCAAGCAATGGGGGAGCTCATTAAGATGGCTACCGTGGGGGAACCATTATGGCTTCGTAGCTTCGAGACTGGTCGCGAAATTCTTAACTATGATGAATATGTTAAGGAGTTTGCAGTTGAAAATTCAAGCAGTAGTGGAAAGCCAAAGAGATCCATTGAAGCCTCAAGAGACACTGCAGTTGTTTTTGTGGATCTCCCTAGTCTTGTCCAAAGTTTTCTAGATGTGAATCAGTGGAAGGAAATGTTTCCGTGTTTGATATCTAAGGCGGCAACTGTTGATGTTATATGCAATGGAGAGGGTCTTAGCAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGCTTCAAATGCTGACTCCTATGGTTCCCACAAGAGAAGTCTATTTTGTTCGTTTCTGCAAGCAGTTGAGTGCTGAACAGTGGGCAATCGTTGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCGTCCCTCGTGAAATGCAGAAAACGCCCTTCTGGTTGCATTATTGAGGACAAGTCCAATGGCCATTGCAAAGTAATATGGGTGGAGCACTCGGAATGCCAGAAGAGTGCAGTCCATTCAATGTATCGCACCATTGTGAACAGTGGCCTAGCTTTTGGGGCCAGGCATTGGATTGCGACTCTACAACTTCAATGTGAACGTCTAGTTTTCTTCATGGCAACAAATGTTCCCATGAAGGATTCAACCGGTGTTGCCACGTTGGCCGGGAGAAAAAGCATTCTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAATTGGCGCGTCAAGCATCCACGCATGGACTAAGGTTACAAGTAAAACTGGAGAAGACATAAGGATAAGTTCTAGAAAGAACTTGAACGATCCTGGTGAACCTCTTGGGTTGATATTGTGCGCTGTTTGTTCTGTATGGTTGCCTGTCTCACCTAATGTTCTGTTTGATTTCTTGAGGGATGAAAATCGCCGAACTGAATGGGACATCATGTCAAGTGGTGGGACAGTGCAGTCTATTGCAAATTTAGCCAAAGGACAAGACCGAGGCAATGCCGTAGCCATTCAAACAATTAAATTGAAAGAAAACAGTGTGTGGATACTGCAAGATAGCTGCACAAACCTTTATGAGTCAATGGTGGCATATGCTTGTGTGGACATTACTGGCATTCAGTCTGTGATGACAGGATGTGATTCTAGCAATCTTGCCATACTGCCCTCAGGATTCTCCATTATTCCTGATGGTCTTGAGTCAAGGCCATTGGTGATTAGTTCAAGGCAGGAAGAAAAAAATACTGAGGGAGGATCTTTGTTTACAATGGCATTCCAGATTCTTACCAATGCTTCTCCCACAGCCAAGTTAACATTGGAATCTGTGGACTCGGTCAACACTCTTGTATCTTGTACATTGAGAAATATCAGAACAAGTTTACAATGTGAAGATGGTTAG 2289 0.45 MGADMSNNNNPPPTSHAKDLFASPALSLSLAGIFRHAGVAAADEAATSVEEGEEGSGGAAERLEEISSENSGPTRSRSEDDFEGGEAEPEDDDDAHGDNKNKKTKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLKEKNKSLRETINKACCPNCGVPTTSRDGVMPTEEQQLRIENAKLKAEVEKLRAALGKYAPGSTSPSCSSGHDQENRSSLDFYTGIFGLDKSRIMDIVNQAMGELIKMATVGEPLWLRSFETGREILNYDEYVKEFAVENSSSSGKPKRSIEASRDTAVVFVDLPSLVQSFLDVNQWKEMFPCLISKAATVDVICNGEGLSRNGAVQLMFAELQMLTPMVPTREVYFVRFCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHSECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSIHAWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVCSVWLPVSPNVLFDFLRDENRRTEWDIMSSGGTVQSIANLAKGQDRGNAVAIQTIKLKENSVWILQDSCTNLYESMVAYACVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVISSRQEEKNTEGGSLFTMAFQILTNASPTAKLTLESVDSVNTLVSCTLRNIRTSLQCEDG* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3653 762 CDD homeodomain 112 163 IPR001356 GO:0003677
Gso11g3653 762 CDD START_ArGLABRA2_like 271 500 - -
Gso11g3653 762 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Gso11g3653 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 19 759 IPR042160 -
Gso11g3653 762 SMART START_1 276 501 IPR002913 GO:0008289
Gso11g3653 762 SUPERFAMILY Bet v1-like 269 501 - -
Gso11g3653 762 Coils Coil 215 235 - -
Gso11g3653 762 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Gso11g3653 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 19 759 - -
Gso11g3653 762 SMART HOX_1 107 169 IPR001356 GO:0003677
Gso11g3653 762 Pfam START domain 279 501 IPR002913 GO:0008289
Gso11g3653 762 ProSiteProfiles START domain profile. 267 504 IPR002913 GO:0008289
Gso11g3653 762 Coils Coil 164 194 - -
Gso11g3653 762 MobiDBLite consensus disorder prediction 40 116 - -
Gso11g3653 762 Pfam Homeodomain 108 163 IPR001356 GO:0003677
Gso11g3653 762 Gene3D - 318 496 IPR023393 -
Gso11g3653 762 Gene3D - 94 178 - -
Gso11g3653 762 SUPERFAMILY Homeodomain-like 97 166 IPR009057 -
Gso11g3653 762 SUPERFAMILY Bet v1-like 523 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3653 Gso-Chr11 52209927 52216503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3653 66 761 Homeobox Transcription Factor Family AT1G79840 66.856 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso11g3653 START 2.6e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3653 K09338 - gmx:100808292 1440.25