Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3650 ATGTCTAGAGCATTGGAACATGATTACATAGGGTTGGCAGAGAATCCGTCAATGGATGGTAAAAACTCATCATCACTGAACTTGAAGGAGACAGAGCTGAGGCTTGGCCTCCCTGGTTGCGAGTCTCCAGAGAGAAAATCAGGTTCTGCACTCTGTCTTTTTGGCAAAGAGTTGCAGAACAACAATAACAATGTTTGCTCTTTGAAGGCTGGGGCCAAGAGGGGCTTCTCTGATGCCATTGACACCTCTTCTGTCACTGAGGGATCTCAAGGAGCTTCTGCTTTGTTCTCTCCAAGAGGTGGCAATGTTGGGAAGCCTCTTATTGGTTTAGACACTCAAACTAACACCACCATCAAAGAGGTTGGTGCAGTTCCTCAATCAGCCAAACCGGTTCAGGAAAACAATGATCAGTTTGCTGCAACAAATGCCCATGCAATTGCTCCTGCTGCTAAGGCACAAGTTGTGGGATGGCCACCAATTCGATCTTTCCGAAAGAACACGATGGCCTCTAATTTGACAAAGAACAATGATGAAGCTGAGGGAAAATCAGGATTTGGTTGTCTCTATGTGAAAGTCAGTATGGATGGTGCCCCTTATCTTAGAAAGGTTGATCTCAAAACCTATAACAACTATATGGAACTTTCCTCAGCTCTTGAGAAGATGTTCAGCTGCTTCAGCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTCCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTTGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGGATCATGAAGGGCTCTGAGGCAATTGGGCTAGCTCCAAGGGCCATGGAAAAATCTAGGAGCCAAAACTAA 924 0.4502 MSRALEHDYIGLAENPSMDGKNSSSLNLKETELRLGLPGCESPERKSGSALCLFGKELQNNNNNVCSLKAGAKRGFSDAIDTSSVTEGSQGASALFSPRGGNVGKPLIGLDTQTNTTIKEVGAVPQSAKPVQENNDQFAATNAHAIAPAAKAQVVGWPPIRSFRKNTMASNLTKNNDEAEGKSGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFSIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQN* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3650 307 Gene3D - 182 301 - -
Gso11g3650 307 Pfam AUX/IAA family 30 298 IPR033389 -
Gso11g3650 307 PANTHER AUXIN-RESPONSIVE PROTEIN 18 299 - -
Gso11g3650 307 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 18 299 IPR003311 GO:0005634|GO:0006355
Gso11g3650 307 ProSiteProfiles PB1 domain profile. 187 289 IPR000270 GO:0005515
Gso11g3650 307 SUPERFAMILY CAD & PB1 domains 187 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3650 Gso-Chr11 52165312 52167705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3650 189 301 B3 DNA Binding Superfamily AT1G19850 32.174 2.98e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso11g3650 AUX_IAA 2.5e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3650 K14484 - gmx:100806699 605.134