Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3642 ATGACTGAAACAGCAAGGTGTCACGAAACTCCAAGCAGCAGCACCAGCAACTCCTCCACCTCAAAACCCCTGAAAACAGAGACCCCGAAACAGAGCAAAGCAAAGAGAAACAGAGACCCCACCAAGCATTCCGATTACCACGGCGTGCGAATGCGCAATTGGGGCAAATGGGTATCCGAAATTCGCGAGCCTCGCAAGAAATCACGCATCTGGCTCGGAACTTTCGCCACCCCTGAAATGGCGGCACGTGCGCACGATGTTGCGGCTTTGAGCATTAAGGGCCACACGGCGGTTCTCAACTTTCCAAACATAGTAAACATGCTTCCCAGACCCGTCACGTGTGCCCCACGTGACATTCAAGCCGCGGCCGCCGAAGCCGCGGCGATGGTGGAGTTCGACCGGGAGAGCTCGGAGGCGGAGTCGACGGAGCTGAGCGAGATTGTGGAGCTTCCGAACATTGAAGAGAGCTTCGACTCGGTTGAGTCGAGAAGTGAATTCGCGTTGATCGACTCGGTGGATAGTTGGGTGTACCCTCCTCCAATGACAGTGGGGAGCATTTGTGACATGATGATGCTTGGGGAACATGAGTGTGGATTGTTCCAATTTGGAACCGATCACCAAACATGTTCTGTTTAG 636 0.5409 MTETARCHETPSSSTSNSSTSKPLKTETPKQSKAKRNRDPTKHSDYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHTAVLNFPNIVNMLPRPVTCAPRDIQAAAAEAAAMVEFDRESSEAESTELSEIVELPNIEESFDSVESRSEFALIDSVDSWVYPPPMTVGSICDMMMLGEHECGLFQFGTDHQTCSV* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3642 211 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Gso11g3642 211 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Gso11g3642 211 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Gso11g3642 211 Pfam AP2 domain 44 95 IPR001471 GO:0003700|GO:0006355
Gso11g3642 211 MobiDBLite consensus disorder prediction 1 47 - -
Gso11g3642 211 CDD AP2 44 103 IPR001471 GO:0003700|GO:0006355
Gso11g3642 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 6 211 - -
Gso11g3642 211 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Gso11g3642 211 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Gso11g3642 211 MobiDBLite consensus disorder prediction 1 27 - -
Gso11g3642 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 211 - -
Gso11g3642 211 MobiDBLite consensus disorder prediction 28 47 - -
Gso11g3642 211 Gene3D AP2/ERF domain 45 104 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3642 Gso-Chr11 52121143 52122223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3642 12 180 AP2-EREBP Transcription Factor Family AT5G11590 53.333 2.59e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso11g3642 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3642 K09286 - gmx:100784419 416.387