Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3630 ATGAATCTTATACAAAACCCCTCTTTAAGTTTGCTACTACACTTGTATTTCTTTCTGCTTTGTCTTCATTGCACAAGTTCTTATCCCACAGCCATGAACTGCACCGACACAAGTCGTGTTTGCACTTCTTTCTTGGCCTTTAAGCCTCATCAAAACCAAACCTTGGCTGTGATACAAAGCATGTTTGATGTGTTGCCCGGTGAGATCACCGTTGAAGGCAATGGCTGGGATTATATATTCATCAGGAAAAACTGTTCTTGTGCTGCTGGTATGAAGAAGTATGTGTCTAACACCACACTCACTGTGAAATCCAATGGAGGATTTGAGCATGATTTGGTGATGGAAGCCTATGACAGGCTTGCTCTCTTGCCCAACACCACGACGCGTTGGGCAAGAGAAGGCGGTATCATATCTCTGAGCTTGTTCTGTAGTTGCTCTAGTGGACTGTGGAACTATCTGATGAGCTATGTCATCAGAGATGGGGACAGTGTTGAATCACTAGCAAGCAGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATGGCATTGACAATCCTACTGTTGGTTCTCTCGTTTATATACCTTTGAATTCGGTTCCTGGTGAGTCTTACCACTTGATGAATGATACTCCTCCAGCTCCAACCCCTTCGCCGTCTGTTAATAATTTTTCAGCTGACCAAGTCAACCAGAAGGCTCATGTACCCCATGAATGGATCATAGGAGGTTTAGGGGTTGGTCTTGCTCTGATAATATTAACCATTATTGTGTGTGTGGCCCTAAGATCACCCAATTGTTTGGTTGAAGCCGGAAATAATGCAAAAGATTCTTCAGGAAAGATCTCTAATAAGTTCTATGTTTTTGGAAATCCAAGTTTGTTTTGTGGATGTGTCAAACCTGTGGACCAGAAGCAAACTGATGGTGAATCCAGCAGTCACCAAATTACCGGTACCAAAACATCAACTCTAATACCTGACATGTTGGACATGGATAAGCCTGTAGTTTTTTCATATGAAGAAATTTTTTCTTCAACTGATGGTTTCTCTGATTCAAATCTACTTGGGCACAGAACATATGGCTCTGTTTACTATGGTCTCCTCGGTGACCAGGAAGTTGCTATTAAAAGAATGACATCTACTAAAACTAAAGAATTTATGTCAGAGGTAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGCTATGCGGTTAGCCATGATGAGTTTTTCCTTATTTATGAATTTGCTCAGAAAGGTTCACTCAGCAGCCATTTGCATGATCCTCAAAGTAAGGGTCATTCACCTCTTTCTTGGATCACAAGGGTCCAGATTGCACTTGATGCTGCTAGGGGCCTTGAATACATACACGAGCATACAAAAACTCGTTACGTCCATCAAGATATCAAGACAAGCAACATTTTACTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTTGTAGGTAAAACAAATGAGGGAGAAACCGAAGCAACCAAAGTTGTAAATGCATATGGATATCTTGCTCCAGAATACTTGAGCAATGGCCTTGCAACGACCAAAAGTGATGTCTATGCATTTGGTGTTGTTCTTTTTGAGATTATATCAGGGAAGGAAGCCATTATTCAAACACAAGGCCCTGAAAAACGATCATTGGCATCTATTATGTTGGCAGTTCTTAGGAACTCACCTGATACCGTGAGCATGTCAAGCACGAGAAACCTCGTTGATCCTATTATGATGGATATGTATCCCCATGATTGTGTATATAAGATGGCCATGCTGGCAAAGCAATGTGTGGATCAGGATCCTGTATTACGCCCTGATATGAAACAAGTTGTGATTTCCCTCTCACAAACCCTGTTGTCTTCTGTTGAGTGGGAAGCCACTCTTGCTGGGAACAGCCAGGTATTCAGTGGCCTTGTTCAGGGAAGATAG 1962 0.4185 MNLIQNPSLSLLLHLYFFLLCLHCTSSYPTAMNCTDTSRVCTSFLAFKPHQNQTLAVIQSMFDVLPGEITVEGNGWDYIFIRKNCSCAAGMKKYVSNTTLTVKSNGGFEHDLVMEAYDRLALLPNTTTRWAREGGIISLSLFCSCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDSIETVNGIDNPTVGSLVYIPLNSVPGESYHLMNDTPPAPTPSPSVNNFSADQVNQKAHVPHEWIIGGLGVGLALIILTIIVCVALRSPNCLVEAGNNAKDSSGKISNKFYVFGNPSLFCGCVKPVDQKQTDGESSSHQITGTKTSTLIPDMLDMDKPVVFSYEEIFSSTDGFSDSNLLGHRTYGSVYYGLLGDQEVAIKRMTSTKTKEFMSEVKVLCKVHHANLVELIGYAVSHDEFFLIYEFAQKGSLSSHLHDPQSKGHSPLSWITRVQIALDAARGLEYIHEHTKTRYVHQDIKTSNILLDASFRAKISDFGLAKLVGKTNEGETEATKVVNAYGYLAPEYLSNGLATTKSDVYAFGVVLFEIISGKEAIIQTQGPEKRSLASIMLAVLRNSPDTVSMSSTRNLVDPIMMDMYPHDCVYKMAMLAKQCVDQDPVLRPDMKQVVISLSQTLLSSVEWEATLAGNSQVFSGLVQGR* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3630 653 Pfam LysM domain 156 188 IPR018392 -
Gso11g3630 653 SMART serkin_6 348 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3630 653 ProSiteProfiles LysM domain profile. 154 207 IPR018392 -
Gso11g3630 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Gso11g3630 653 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 32 653 IPR044812 GO:0019199|GO:0045087
Gso11g3630 653 SUPERFAMILY Protein kinase-like (PK-like) 323 625 IPR011009 -
Gso11g3630 653 CDD LysM 155 187 IPR018392 -
Gso11g3630 653 SMART LysM_2 155 196 IPR018392 -
Gso11g3630 653 SUPERFAMILY LysM domain 154 196 IPR036779 -
Gso11g3630 653 ProSiteProfiles Protein kinase domain profile. 348 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3630 653 Gene3D Phosphorylase Kinase; domain 1 323 419 - -
Gso11g3630 653 PANTHER BNAA06G02020D PROTEIN 32 653 - -
Gso11g3630 653 Gene3D Transferase(Phosphotransferase) domain 1 421 639 - -
Gso11g3630 653 Gene3D LysM domain 153 203 IPR036779 -
Gso11g3630 653 Pfam Protein tyrosine and serine/threonine kinase 353 623 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3630 Gso-Chr11 51981228 51986574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3630 32 653 Receptor kinase-like Gene Family AT1G51940 62.986 0.0 752
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gso11g3630 PK_Tyr_Ser-Thr 8.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3630 - - gmx:100781752 1277.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0182 15 1556297 1562304 Gso11g3630 11 51981228 51986574 GST
Gso11g3630 11 51981228 51986574 Gso7g0130 7 1220285 1227109 PCT
Gso11g3630 11 51981228 51986574 Gso8g1667 8 16323027 16330143 PCT
Gso7g0130 7 1220285 1227109 Gso11g3630 11 51981228 51986574 PCT
Gso8g1667 8 16323027 16330143 Gso11g3630 11 51981228 51986574 PCT