Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3628 ATGAATGAAAGGTCAAGAGACGAGGCATCTCCTCAGCTGTTAGATTTGATCTCAAACGAGAGAGAGTGGCAGATGAACAAGAGAAACGAAGGAAAGTCCTCAGAAGAAAGAAAACTCGAACTCAGGCTTGGTCCACCTGGTGAAGACTGGTCTCTGGGTGGTAAAATGAAGAACAACAACACAGAAAGAGAAGATCAATCTCTTCTCTCTCTTGGTTGCTTCTCTCCTAACATTAACAGTAATGCGTTCCAAAGCAAGGCCTCTCATCCATGGCCAAACTACCACCACCATGGCCAGGGTAACAACAAAAAAGCCTCTTCTTCATCATTTCTTCAGTTCCCATCATCAACCCAACCTGTGATGATGGGAAAAGATGCTTCTTGCCCTAAGGTGGTGGTAGAGTTGCAGCAGAATGGTGGTGATGGCAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCCCAGCCTAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCATTCAGGAAGAACCTTTCAAGCAGCAGCAGTGCTTCTAAGCCACCACCACCTCCTGAGTCTCAGGCTGAGCAGCAGCACAACAAGGTTGCTGGTAAAAAACCTGTTGACAACTATGCTAATAATAAAGGTTTGTTTGTCAAGATCAACATGGATGGTGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTACGACAGCTATGAAAACCTCTCTTCTGCTGTGGACGAGCTATTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGGGTTCACAACAAGCAGGAGGAAGAGAAAGCAATTACGGGGTTATTGGATGGAAGTGGAGAGTTTACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGAGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAGGACAAGATACCACTTGACTCAGCAATGAAATGA 1041 0.4611 MNERSRDEASPQLLDLISNEREWQMNKRNEGKSSEERKLELRLGPPGEDWSLGGKMKNNNTEREDQSLLSLGCFSPNINSNAFQSKASHPWPNYHHHGQGNNKKASSSSFLQFPSSTQPVMMGKDASCPKVVVELQQNGGDGKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLSSSSSASKPPPPPESQAEQQHNKVAGKKPVDNYANNKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAITGLLDGSGEFTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQDKIPLDSAMK* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3628 346 MobiDBLite consensus disorder prediction 21 44 - -
Gso11g3628 346 Pfam AUX/IAA family 39 329 IPR033389 -
Gso11g3628 346 MobiDBLite consensus disorder prediction 99 122 - -
Gso11g3628 346 ProSiteProfiles PB1 domain profile. 220 324 IPR000270 GO:0005515
Gso11g3628 346 SUPERFAMILY CAD & PB1 domains 216 321 - -
Gso11g3628 346 MobiDBLite consensus disorder prediction 1 64 - -
Gso11g3628 346 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 337 IPR003311 GO:0005634|GO:0006355
Gso11g3628 346 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 337 - -
Gso11g3628 346 MobiDBLite consensus disorder prediction 84 123 - -
Gso11g3628 346 MobiDBLite consensus disorder prediction 142 165 - -
Gso11g3628 346 MobiDBLite consensus disorder prediction 142 213 - -
Gso11g3628 346 Gene3D - 214 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3628 Gso-Chr11 51942326 51946436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3628 224 335 B3 DNA Binding Superfamily AT4G23980 33.929 1.18e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso11g3628 AUX_IAA 9.5e-72 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3628 K14484 - gmx:100799244 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0186 15 1588841 1592613 Gso11g3628 11 51942326 51946436 GST
Gso11g3628 11 51942326 51946436 Gso7g0129 7 1207565 1211087 PCT
Gso11g3628 11 51942326 51946436 Gso8g1666 8 16308908 16312104 PCT
Gso7g0129 7 1207565 1211087 Gso11g3628 11 51942326 51946436 PCT
Gso8g1666 8 16308908 16312104 Gso11g3628 11 51942326 51946436 PCT