Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3621 ATGATTGGGAAGGGAGGATGTGGAATTGTTTATCTTGGTTCCTTACAGGATGGCACACAAGTTGCTGTCAAAATGCTCTTGCCAAAATGTCCTCAAGGATCTCAGCAGTTTCAGACTGAGGCTCAACTCTTAATGCGTGTGCATCACAAAAACTTAGCTTCGTTTCTCGGATACTGTAATGAAGTTGGACACACAGGCATCATCTATGAATACATGGCTTATGGGAACTTGGAAGAGTATCTTTCAGATGCAAGGAGAGAACCGTTGAGTTGGAGACAGAGGATTCAGATAGCAGTTGATGCTGCTCAAGAACCTATATGTTTAGGTATCGAGTACTTGCATCACGGCTGCAAGCCGCCAATAATCCATAGAGACATTAAGACTGCAAACATTTTGCTGAATGAGAAAATGCAAGCAAAAGTAGCTGATTTTGGTTTCTCAAAACTTTTCTCAGCTGAAAATGAAAGTCATGTATCAACTGTAGTTATTGGCACATTTGGATATGTTGATCCAGAATACTACACATCCAGCAGGCTGACTGAGAAAAGCGACGTTTATAGTTTTGGCATTGTGCTTTTGGAGCTAATTACTGGGCAGCCAGCAATAATAAAAGGTCATCAGAACACTCACATTGCGCAATGGGTTGACAACTTTCTTGTAAGAGGAGATATACAACAAATTGTTGATCCAAGGCTGCGGGGAGATTTTGACTTTGGTTCTATGTGGAAGGCCTTGGAGGCAGCAATAGCTTGTGTGCCTTCAATATCTATCCAAAGGCCATCAATGAGTTACATTGTCTCTGAACTGAAAGAGTCCTTAGAAATGGAAGCAGCTCGTGAAAAAGAAGGCATCAACTCGATTGAAATGAATGTTGTTGATCTTGAAGCTTTGTGTGGCCCGGATGCAAGATAG 912 0.4167 MIGKGGCGIVYLGSLQDGTQVAVKMLLPKCPQGSQQFQTEAQLLMRVHHKNLASFLGYCNEVGHTGIIYEYMAYGNLEEYLSDARREPLSWRQRIQIAVDAAQEPICLGIEYLHHGCKPPIIHRDIKTANILLNEKMQAKVADFGFSKLFSAENESHVSTVVIGTFGYVDPEYYTSSRLTEKSDVYSFGIVLLELITGQPAIIKGHQNTHIAQWVDNFLVRGDIQQIVDPRLRGDFDFGSMWKALEAAIACVPSISIQRPSMSYIVSELKESLEMEAAREKEGINSIEMNVVDLEALCGPDAR* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3621 303 SMART serkin_6 1 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3621 303 Gene3D Phosphorylase Kinase; domain 1 2 72 - -
Gso11g3621 303 ProSiteProfiles Protein kinase domain profile. 1 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3621 303 PANTHER OS07G0107800 PROTEIN-RELATED 2 303 - -
Gso11g3621 303 SUPERFAMILY Protein kinase-like (PK-like) 1 271 IPR011009 -
Gso11g3621 303 PANTHER KINASE-TRANSFORMING PROTEIN RAF, PUTATIVE-RELATED 2 303 - -
Gso11g3621 303 Coils Coil 270 290 - -
Gso11g3621 303 Gene3D Transferase(Phosphotransferase) domain 1 73 295 - -
Gso11g3621 303 Pfam Protein tyrosine and serine/threonine kinase 2 215 IPR001245 GO:0004672|GO:0006468
Gso11g3621 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Gso11g3621 303 CDD STKc_IRAK 2 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3621 Gso-Chr11 51886598 51889151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3621 1 282 Receptor kinase-like Gene Family AT4G29180 54.209 6.37e-106 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Gso11g3621 PK_Tyr_Ser-Thr 7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3621 - - gsj:114375790 612.453