Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3616 ATGGATGGTCTAAGTTGGGATGCCTCATCAGTACAACTTGTTGCTAACACACCGATCTTGTGGAGCACTCAGCCTCAAGACCTTGAAGGAGGCTATCTTCATTCCATGCCCCACCTATGTTCAAGTGCTCTCAATCAAACAGGCTACCCATATCCATGTTCTGAAAAAGTGAGGGGCATGGTTCACTCATCCACTACTTGTGAGATGATGAGTATGATGCCAAACACAAATCTGCCACAAAGAATTACAGCAACCATGCCTGTGAAATCAGTAGTAGCAGCTGGAGCCAGTTGGGAAGAAACTTTAACATCCCAATCACGCCCGTCCCTTTCAGCGAATATGAACCAAACTAGCAATTATGTAGCAGATTTCAACATGGCCCACCAGCAACAACACCAACACCTTATCAATGGCACACAAAATGGCAAGGCTACTACCTGCTCTCTTGATCAGTCACTTGATTGCTTGCTTTCAGCTACTAATAATAGCAACACAGACATGTCTGTCCAAGATGATGGGATTTCCATGATTTTATCTGACTGCAGAAACCTATGGAATAACTTCAGTTATGGCAGTGTAGCTAATACCTCTGGTGAATCTGAGAGCAATGCTTCCATTAATGCTAGAAACAGTGACATGAGGTATCCCTCAGTCAGTGAACTGGATGAATCAGTGTCTCAAAGTTTCTCTGATCAATATCTCAGTCAAGGAAGAGTAATAGATTCATCTGAAGTTATTTGCACAAAAAGGAGCAGTAGTTCGGGCTTCAGCATTGCTCAGAATTCTTCTGCCACTGAATTAGGTGGTTTCACGCTTATCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGGATCATAAGTATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGACACCTTCCTTTGAAGAACCTGATCCAGAAGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGCCTGGAAGCAGTGGAAAAGCCTAAAAGGAAGAATGTTAGGATATCTTCTGATCCACAGACTGTGGCTGCCAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGAGGAAGCAAGATGGATACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCACAAGTCAAAGCACTAGAAAATCTTGGTAACAAGCTTGACACAATGAATTGTCCTCCTACTAACATAGCCTTCTCTTTCAACCCTTCTTTTCCCATACAAACACATTTCCCCATCCAAAACCCTAGCAGCCACATCCAATACTCCAAGGGTTGA 1353 0.4339 MDGLSWDASSVQLVANTPILWSTQPQDLEGGYLHSMPHLCSSALNQTGYPYPCSEKVRGMVHSSTTCEMMSMMPNTNLPQRITATMPVKSVVAAGASWEETLTSQSRPSLSANMNQTSNYVADFNMAHQQQHQHLINGTQNGKATTCSLDQSLDCLLSATNNSNTDMSVQDDGISMILSDCRNLWNNFSYGSVANTSGESESNASINARNSDMRYPSVSELDESVSQSFSDQYLSQGRVIDSSEVICTKRSSSSGFSIAQNSSATELGGFTLISETSPKSKRPRWDHKYPGSSNINFQQPNSSVTPSFEEPDPEAIAQMKEMIYRAAAFRPVNLGLEAVEKPKRKNVRISSDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLDTMNCPPTNIAFSFNPSFPIQTHFPIQNPSSHIQYSKG* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3616 450 MobiDBLite consensus disorder prediction 291 308 - -
Gso11g3616 450 Pfam Helix-loop-helix DNA-binding domain 359 398 IPR011598 GO:0046983
Gso11g3616 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Gso11g3616 450 SMART finulus 355 404 IPR011598 GO:0046983
Gso11g3616 450 Gene3D - 354 417 IPR036638 GO:0046983
Gso11g3616 450 MobiDBLite consensus disorder prediction 275 310 - -
Gso11g3616 450 PANTHER TRANSCRIPTION FACTOR BHLH87 1 447 - -
Gso11g3616 450 Coils Coil 388 408 - -
Gso11g3616 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 414 IPR036638 GO:0046983
Gso11g3616 450 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 447 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3616 Gso-Chr11 51840617 51843175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3616 113 441 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.555 3.71e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g3616 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3616 - - gmx:100778004 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0197 15 1744886 1747534 Gso11g3616 11 51840617 51843175 GST
Gso11g3616 11 51840617 51843175 Gso7g0117 7 1060549 1062438 PCT
Gso11g3616 11 51840617 51843175 Gso8g1641 8 16040751 16042934 PCT
Gso7g0117 7 1060549 1062438 Gso11g3616 11 51840617 51843175 PCT
Gso8g1641 8 16040751 16042934 Gso11g3616 11 51840617 51843175 PCT