Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3606 ATGATGAGTCGAGAACAACAGAAGCGAGGGAAGCAAGAAAAAGGTTCTGATGGAGCTGAAAAGGTTATTGTTGCCGTTAAGGCTTCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTAACTCATGTTGTGCAACCTGGCGATTGCATTACACTGCTAGTGGTTGTACCTTCACAAAGTGCAGGCCGAAGATTATGGGGTTTTCCAAGGTTTGCTGGTGACTGTGCCAATGGTCAGAAGAAGTCTACTTCAGGATCATCAAGTTCAGAACATAAGAGTGATATCACTGATTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCTAACAAGATAAATGTGAAGATTAAAATTGTTTCTGGATCACCATGTGGAGCAGTGGCTGCGGAAGCCAAGAAATCCCAAGCCAATTGGGTTGTACTAGACAAGCAGCTCAAACATGAGGAAAAACAATGTATGGAAGAGCTGCAGTGCAACATCGTGGTTATGAAGCGTTCCCAACCCAAGGTACTCCGCTTGAATTTGGTTGGAACACAAAAGAAGGATTTTGAAGAATTATGTCCATTACCTTCTGAACAAAATGAGATGCCTGGAAAACAAATTAAGAAGAAGAATGATTCTTTAAATTCCATAAAGGGACCAGTTGTCACTCCAACTAGCAGCCCTGAGCTAGGGACACCATTTACTACAACTGAAGCTGGTACTTCTTCGGTTTCAAGCTCTGATCAAGGAACTTCACCATTCTTCATCTCTGAGATGAATGGTGAGTCAAAGAAAGAGGAAACTATTAAAGAAAATCCAGAACTTGATGATTCTATATCAGACACAGACAGTGAAAATTTGTCCACATCTTCAACAAGCTTGAGATTCCAGCCATGGATCACTGATTTACTTTTGCATCAACAGTCATCTCAACCCAAGGAAGAAAGAACAGAGAGATCTTATAATAGGCTTCAATCATCTACCACTAGAGCTTTGCTAGAAAAGTTCTCAAGACTTGATAGAGAAGCTGAAATTGAAATCTCAACCTATAAGACCGACTACGATTTCAGTGGAAATGTAAGAGAAGCAGTGGCATTATCTAGAAATACCCCACCTGGTCCACCTCCCTTATGTTCAATCTGCCAACACAAGGCTCCTGTTTTTGGAAAACCTCCCAGATGGTTCAGCTATGCTGAATTGGAGCTTGCCACAGGTGGATTTTCAAAAGCCAATTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGGCTTCTGCCAGATGGACAAGTCATTGCTGTCAAGCAACATAAATTGGCTAGTTCTCAGGGTGATCTAGAATTCTGCTCAGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGTTGATTGGGTTCTGTATAGAGGATAAAAGAAGGCTATTGGTATATGAGTACATATGTAATGGATCATTGGATTCTCATTTATATGGGAGACAGCCAGAACCATTAGAATGGTCTGCCCGGCAAAAAATTGCTGTTGGAGCTGCTCGAGGGTTGCGATATCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCATCGTGACATGCGGCCTAACAACATTCTTATCACTCATGATTTTGAACCACTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGTGACACAGGAGTGGAAACTAGAGTAATTGGAACGTTTGGGTACTTGGCTCCAGAATATGCTCAAAGCGGCCAAATAACTGAAAAGGCTGATGTTTATTCTTTCGGTGTGGTATTGGTGGAACTTGTTACAGGACGAAAGGCTGTGGATCTCAATCGACCGAAGGGACAACAGTGTCTTACTGAGTGGGCTCGGCCACTATTAGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGTTGGGAAGTCACTATTCCGAGCATGAGGTCTATTGCATGCTGCATGCTGCCTCATTATGCATAAGACGAGATCCTTATTCTAGACCACGCATGTCACAGGTTCTGCGAATACTGGAGGGAGACACGGTCGTGGACCCAAATTACATTTCAACTCCCAGTTATGATTTGGGAAAACGGAGTGGTATTTTGTTTTTTGGCCAGAAACATAAGCAAAGAAAGCGCCATTACAACAGTGGTCCCCCTTTGGTAAGAGTCACTGGAAGCGTTCAGTGGGAACCTCTGAGTACAAAAGCCTTTTCCTATTGGGAAAGCAACAAGTCTAAGTGGACAGACAACATGTGA 2253 0.431 MMSREQQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSAGRRLWGFPRFAGDCANGQKKSTSGSSSSEHKSDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAEAKKSQANWVVLDKQLKHEEKQCMEELQCNIVVMKRSQPKVLRLNLVGTQKKDFEELCPLPSEQNEMPGKQIKKKNDSLNSIKGPVVTPTSSPELGTPFTTTEAGTSSVSSSDQGTSPFFISEMNGESKKEETIKENPELDDSISDTDSENLSTSSTSLRFQPWITDLLLHQQSSQPKEERTERSYNRLQSSTTRALLEKFSRLDREAEIEISTYKTDYDFSGNVREAVALSRNTPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSKANFLAEGGFGSVHRGLLPDGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQPEPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEHEVYCMLHAASLCIRRDPYSRPRMSQVLRILEGDTVVDPNYISTPSYDLGKRSGILFFGQKHKQRKRHYNSGPPLVRVTGSVQWEPLSTKAFSYWESNKSKWTDNM* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3606 750 ProSiteProfiles Protein kinase domain profile. 405 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3606 750 ProSitePatterns Tyrosine protein kinases specific active-site signature. 526 538 IPR008266 GO:0004672|GO:0006468
Gso11g3606 750 MobiDBLite consensus disorder prediction 214 256 - -
Gso11g3606 750 Pfam Protein tyrosine and serine/threonine kinase 409 674 IPR001245 GO:0004672|GO:0006468
Gso11g3606 750 Gene3D Transferase(Phosphotransferase) domain 1 481 684 - -
Gso11g3606 750 Gene3D Phosphorylase Kinase; domain 1 377 480 - -
Gso11g3606 750 MobiDBLite consensus disorder prediction 193 288 - -
Gso11g3606 750 PANTHER OS01G0253100 PROTEIN 17 703 IPR045271 GO:0004714|GO:0006468
Gso11g3606 750 CDD STKc_IRAK 411 677 - -
Gso11g3606 750 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 17 703 - -
Gso11g3606 750 CDD USP_Like 21 145 - -
Gso11g3606 750 SUPERFAMILY Protein kinase-like (PK-like) 389 686 IPR011009 -
Gso11g3606 750 MobiDBLite consensus disorder prediction 258 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3606 Gso-Chr11 51745359 51751183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3606 385 695 Trihelix Transcription Factor Family AT1G70460 52.025 6.98e-101 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gso11g3606 PK_Tyr_Ser-Thr 3.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3606 - - gmx:100789216 1391.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0206 15 1848929 1854900 Gso11g3606 11 51745359 51751183 GST
Gso11g3606 11 51745359 51751183 Gso7g0097 7 854646 860562 PCT
Gso11g3606 11 51745359 51751183 Gso8g1611 8 15745057 15751060 PCT
Gso7g0097 7 854646 860562 Gso11g3606 11 51745359 51751183 PCT
Gso8g1611 8 15745057 15751060 Gso11g3606 11 51745359 51751183 PCT