Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3605 ATGGACGCCGAAGCGGACCCTCCTCAAAACCCTATCACAAGACACAAATGCTTGGCATGCTATAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAAAACTTCGTATCATTCTGTTCATCAGCCAAGATGCGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAGAGGAATTTGTTCAAAGATTTTCTCTCAACAGGGCTGTCAACTTTGTCTAGCACTATTTGATAGTCCCGGGTCTCTCATTGGTCATAGAGAAACATGTCGCTTATCTGCCCCTACTTGTCCAGGAACAAGTGCATTGCCCTATATAGATTCCCAGTTTGATTGTCAAGATTCTTCTGATGAAAACCATGCTGGGGAGGGCCCTGGAGGAGCAGTTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCTAGAGTGTGTTTGGTTGATGAAGATGAGAGATTAATCTTTCATACATATGTACAGCCTGAAATACCTGTTACTAATTACAGATATGATATAACTGGATTGACAGAAGAGCATCTCAAAAACGCCATTCCACTAAAGAAAGTTCGAGAAAAGCTACTGCAAATTCTACAGAATGGGGAATCCATTGGCAAAGTTAGACTGGATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTAGATTGCTTAAAAATGAATTATCCTGATCATATGCTGAGAGACACTGCAAAGTATCGTCCTTTGATGAAAACAAATTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGTTATGATATCCAATCCGGCACTCATGACCCTTATGAAGATTGTATTTCTGTCATGAGACTATACAAGAGAATACGATCTCAACTTCATCCGGAGGAAGACCATGGAACAATGACTCTGAGTAACAACATTGTTGGCATGCCTGATAGCTGGATATCTAGGGAACTTGACAACCTCACACCAGATGAACTTTATGCCATGTCAAGATCAGATTATAAGTGTTGGTGCTTGGATTTGATACCAAGATTGTCAGCCTGA 1101 0.4196 MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTCPGTSALPYIDSQFDCQDSSDENHAGEGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPVTNYRYDITGLTEEHLKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLYKRIRSQLHPEEDHGTMTLSNNIVGMPDSWISRELDNLTPDELYAMSRSDYKCWCLDLIPRLSA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3605 366 SMART exoiiiendus 138 312 IPR013520 -
Gso11g3605 366 CDD REX4_like 140 304 IPR037431 GO:0006364|GO:0008408
Gso11g3605 366 PANTHER EXONUCLEASE FAMILY PROTEIN 12 361 - -
Gso11g3605 366 Gene3D - 137 319 IPR036397 GO:0003676
Gso11g3605 366 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Gso11g3605 366 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 12 361 - -
Gso11g3605 366 SUPERFAMILY Ribonuclease H-like 140 308 IPR012337 -
Gso11g3605 366 Pfam Exonuclease 140 303 IPR013520 -
Gso11g3605 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3605 Gso-Chr11 51738500 51741985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3605 1 359 C2H2 Transcription Factor Family AT3G27970 50.418 1.55e-132 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3605 K18327 - gmx:100788682 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0207 15 1857275 1860554 Gso11g3605 11 51738500 51741985 GST