Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3592 ATGTCAAGGAGCAGCACACAGGCATGTGCAGCTTGTAAGTACCAACGCAGGAAGTGCGGGTCCAACTGCATTCTCGCACCTTATTTTCCTCATGATCGCCAAAAACAGTTCCTTAATGCCCATCGTTTATTCGGGGTTGGCAAGATCACTAACATGCTTAAGCCCCTCGATCAGCATCACAGAGACTTAGCCATGAGCACCGTTATCTACGAATCCGACATGCGCGCCCGTGACCCCATTGGCGGTTGCTACAGGCTCGTCCTCCAATTGCAATCTCAGATCGATTACGCCACCCAAGAACTTCATCTTCTTCTTCAACACCTTGCTTTCTTCAAATCACACCCTCCTAATTCTAATTCTCCTGACATCATCAATAATGTCACTCCTCAGCCTCCTTACCCCCTTGAACAACAAATTCCACAGGAGCATCAACAGCAACAACAACAATGCTTTAACTACAATCTTCTGCAAGATGATATCAATATGTGGACCATTCAGAACGCTGTACCTCCTTTGTCACCCTTGTCCTTAGAGAATGACATCAATCAAGATCAAGATCCTGTTGTTGATTATGGATACGATCAAAAGCCTGGTGTTCTTGATCTGATGGATAAAATAAAATCAGATGATTCAAGTGCCCAATATTAA 648 0.4444 MSRSSTQACAACKYQRRKCGSNCILAPYFPHDRQKQFLNAHRLFGVGKITNMLKPLDQHHRDLAMSTVIYESDMRARDPIGGCYRLVLQLQSQIDYATQELHLLLQHLAFFKSHPPNSNSPDIINNVTPQPPYPLEQQIPQEHQQQQQQCFNYNLLQDDINMWTIQNAVPPLSPLSLENDINQDQDPVVDYGYDQKPGVLDLMDKIKSDDSSAQY* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3592 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 212 - -
Gso11g3592 215 PANTHER LOB DOMAIN PROTEIN 3 212 - -
Gso11g3592 215 Pfam Lateral organ boundaries (LOB) domain 8 103 IPR004883 -
Gso11g3592 215 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3592 Gso-Chr11 51628579 51629434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3592 7 166 AS2 family AT3G13850 44.134 4.54e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso11g3592 LOB 2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3592 - - gmx:102668887 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3592 11 51628579 51629434 Gso7g0081 7 703420 705420 PCT
Gso11g3592 11 51628579 51629434 Gso8g1593 8 15581881 15584746 PCT
Gso7g0081 7 703420 705420 Gso11g3592 11 51628579 51629434 PCT
Gso8g1593 8 15581881 15584746 Gso11g3592 11 51628579 51629434 PCT