Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3590 ATGATAATTCACAAAACTCCAAATATGGGAAAAGATGATGAAGGGTTTGATGTTCCAAAAACCATGTCTAATTTGACTTCTGCATCTGGTGAAGCTAGGGCTTCCTCAGGCAACAGAACCGAAATTGGCACTGATTACTCACAGCAATACTTTACTCCACCACCAACTCAAACACAGCCTCCACTAAAGAAAAAGAGAAACCTTCCTGGCAACCCAGACCCGGAAGCTGAAGTTGTCGCCTTGTCTCCAAAGACTCTCTTGGCAACTAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAATCTCCAACTTCACAGAAGAGGACACAATTTACCATGGAAGCTGAAGCAGAGATCAAGCAAAGACATTATAAGGAAGAAGGTGTATGTGTGCCCAGAACCTAGTTGCGTGCACCACGAGCCTTCAAGGGCCCTGGGGGACCTCACTGGCATCAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCCAAGACCTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACACACAGAGCCTTCTGCGATGCATTAGCAGAGGAGAGTGCAAGATCAGTGACAGGCATAGTAGCCAACTCAACAACTCAACCAACTGAAGCAGCAGGAGTAGTGATCTCTTCATCCTCTCTTCATCAAGACATGATCCATGCTAGTAATAATAATTTCCCATTGAAGAAAGAGCAACAAGGTTGCATACCCCATTGGCTTGGGCAACCATCACCCTCTTCTGCTTCATCATCATTCTTGTTCTCTCATCAAGATCATCATCTCCATGAAAACCCTAACCCTAGAGGTGGTCCCACTCTTCTTCCTCCTCCTTACCACCAAACAGCTCCTCACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCCCAAATGGGTGCAACGATGAGCAAAACCGGCTCCATGATTAGGACCCACCAACAGCAGGCTCACGTGTCTGCCAATGCTGCTTTGAATTTGTCCTCACGTGACCACCAGATGAACCCCACTCCCCATGACTTGCTACCTTTCGGGAATAATAAAGCTGTTGATAACGGTGTTGGTGTTTCTCCTTCACTCCTTCATCATGTTATCAATTCTTTCTCTTCTTCCCCCTTTGAAGGGACTTTTGAGGACACTTTTGGTGGTGGCGATGCCATGACCGCCGATGAAGGTGGCGGTGGCGGTGCCGGAGGAAACAATAACGAAGGCTTGACAAGAGATTTCTTGGGTCTTAGACATCTCTCTCACACTGATATCCTCAACATTGCTGGCGTGGGAAACTGCATGAACTCCTCCCAACACAACCAAACCCGAAACCCTTGGCAAGGTTAA 1443 0.4699 MIIHKTPNMGKDDEGFDVPKTMSNLTSASGEARASSGNRTEIGTDYSQQYFTPPPTQTQPPLKKKRNLPGNPDPEAEVVALSPKTLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSSKDIIRKKVYVCPEPSCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGIVANSTTQPTEAAGVVISSSSLHQDMIHASNNNFPLKKEQQGCIPHWLGQPSPSSASSSFLFSHQDHHLHENPNPRGGPTLLPPPYHQTAPHMSATALLQKAAQMGATMSKTGSMIRTHQQQAHVSANAALNLSSRDHQMNPTPHDLLPFGNNKAVDNGVGVSPSLLHHVINSFSSSPFEGTFEDTFGGGDAMTADEGGGGGAGGNNNEGLTRDFLGLRHLSHTDILNIAGVGNCMNSSQHNQTRNPWQG* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3590 480 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 464 - -
Gso11g3590 480 MobiDBLite consensus disorder prediction 296 315 - -
Gso11g3590 480 SMART c2h2final6 134 164 IPR013087 -
Gso11g3590 480 SMART c2h2final6 169 189 IPR013087 -
Gso11g3590 480 SMART c2h2final6 92 114 IPR013087 -
Gso11g3590 480 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 24 464 - -
Gso11g3590 480 MobiDBLite consensus disorder prediction 20 53 - -
Gso11g3590 480 SUPERFAMILY beta-beta-alpha zinc fingers 91 189 IPR036236 -
Gso11g3590 480 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Gso11g3590 480 MobiDBLite consensus disorder prediction 1 75 - -
Gso11g3590 480 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
Gso11g3590 480 Gene3D Classic Zinc Finger 71 140 - -
Gso11g3590 480 Gene3D Classic Zinc Finger 145 226 - -
Gso11g3590 480 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3590 Gso-Chr11 51603759 51606694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3590 22 480 IDZ Gene Family AT3G13810 49.623 1.53e-143 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g3590 zf-C2H2_jaz 7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3590 K25870 - gmx:100819692 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0218 15 1986255 1989332 Gso11g3590 11 51603759 51606694 GST
Gso11g3590 11 51603759 51606694 Gso7g0078 7 681893 685319 PCT
Gso11g3590 11 51603759 51606694 Gso8g1591 8 15561207 15564814 PCT
Gso7g0078 7 681893 685319 Gso11g3590 11 51603759 51606694 PCT
Gso8g1591 8 15561207 15564814 Gso11g3590 11 51603759 51606694 PCT