Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3586 ATGGATTACTATTATGTCTCTCAACACTCGCAATTGGAATCCGAGGCTGATGCCTACAATGTTGATGTCAATGATGAGCACGTAAAACCCTCCTTCAATCGTCGTGATTCCTTTTCAGGGAAACTCTTCGTTGGAGGAATTTCTTGGGAGACTTCTCAAGAGTCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACTGATTCAGTGATAATGACAAATAAACTTTCTGGAAGGCCACGGGGGTTTGGCTTTGTAACATTTGCCAATTCAGCTGTTGCAGATGAAGTTTTGGCACAGGAACATACCATTGATCACAGAGTGGTTGAAGTGAAGAGGACAGTCCCAAGGGAGGACGTGGATGTTACTGGAGTATTCAAAACAAAGAAGATATTTGTTGGGGGAATAGCCCAGTTTTTCACTGATGATGAGTTGAGGGAATACTTTTCACCTTATGGCAATGTTATTGAGTGCCAAATCATGCTAGATCACAACACTGGGCGATCTAGAGGCTTTGGATTTGTCACTTTTGATGATGAAGATTCAGTTGAAAAGGTTTTTTCAGTGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAAAGGGCTGAGCCCAAAAGATCTGGAGTTGATTACTGCAACACCTCACGAAAGTCATACGGTGGTTTTGGCAATGAAATGGATGGACATGGTGGGAATAGTTCTAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACAGGTTCTGGAATGAACGGAGCATATGGTCATTTTGATGGGAGTTTTGGGGGAAGTGCTGCCACTGTTTATGGTGGCTATTGTGGATATGGCTATGAATTTGGATATGGTGGGCCAATGTATTGCTTTGGTGGTTATGGACTCAATTCCTATGGTAATCCTGGGGGTTATGGTAGCGGCATTACTTCCTATGGAGATGTTAATGCATATGGAAGAGCTGGTAGTTTCAATGGCAGTGGTGGCTATGACAGCAGCAAAGTGGCTGAGAAGGGTGATGGTCCTACAACCGGAAGGTACCATCCTTACTGGAAGTGA 1062 0.4256 MDYYYVSQHSQLESEADAYNVDVNDEHVKPSFNRRDSFSGKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFANSAVADEVLAQEHTIDHRVVEVKRTVPREDVDVTGVFKTKKIFVGGIAQFFTDDELREYFSPYGNVIECQIMLDHNTGRSRGFGFVTFDDEDSVEKVFSVGKIHEIGGKQVEIKRAEPKRSGVDYCNTSRKSYGGFGNEMDGHGGNSSRNRNHGKRGGQYTGSGMNGAYGHFDGSFGGSAATVYGGYCGYGYEFGYGGPMYCFGGYGLNSYGNPGGYGSGITSYGDVNAYGRAGSFNGSGGYDSSKVAEKGDGPTTGRYHPYWK* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3586 353 SUPERFAMILY RNA-binding domain, RBD 39 119 IPR035979 GO:0003676
Gso11g3586 353 Gene3D - 39 121 IPR012677 -
Gso11g3586 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 207 IPR000504 GO:0003723
Gso11g3586 353 PANTHER BOULE-RELATED 34 351 IPR037366 GO:0003729
Gso11g3586 353 MobiDBLite consensus disorder prediction 232 247 - -
Gso11g3586 353 MobiDBLite consensus disorder prediction 226 247 - -
Gso11g3586 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Gso11g3586 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 107 IPR000504 GO:0003723
Gso11g3586 353 SUPERFAMILY RNA-binding domain, RBD 127 213 IPR035979 GO:0003676
Gso11g3586 353 SMART rrm1_1 130 203 IPR000504 GO:0003723
Gso11g3586 353 SMART rrm1_1 41 112 IPR000504 GO:0003723
Gso11g3586 353 Gene3D - 125 261 IPR012677 -
Gso11g3586 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 116 IPR000504 GO:0003723
Gso11g3586 353 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 34 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3586 Gso-Chr11 51565657 51568699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3586 42 304 Eukaryotic Initiation Factors Gene Family AT1G71770 24.315 1.95e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3586 K12741 - gmx:100818080 700.664