Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3578 ATGGCACGGGGGAGGATCCGGGCAAGGCTCCGAAGGAGCCATCTTTACACATTTGGTGGTTGCCTGAGGCCAACTACCACTGAGGAGGTGCCTCATCCACTTCAAGGTCCCGGTTACTCACGAACAGTATACTGCAACCAGCCTCAACTCCTTGAAAAGAATTCTCTATTTTACTGCAAGAATGATGTATCAACCACCAAATATAATGTCATCACGTTTTTCCCTAAGGCATTGTTTGAACAATTTCGAAGGGTTGCTAATATATACTTCCTTTTGGCTGCTTGCCTTTCGGCGTCTCCAATTTCACCTTTCAGCCCTCTTAGCATGATTGCTCCTTTGGCGTTTGTTGTGGGGCTTAGTATGGCAAAGGAGGCATTGGAGGATTCGCGCAGGTTCCTTCAGGATGTCAAAGTTAACCACCGGAAAGCTAGTCTCCATAAAGGCAATGGTGATTTTGGTCTCAGGTCGTGGCAGAAGATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGACCAATTTTTTCCAGCTGACTTGCTTCTCTTGGCGTCGAGTTATGAAGATGGGATATGCTATGTGGAGACAATGAATTTAGATGGGGAGACCAACTTGAAGGTGAAGAGATCTTTGGAGGCTACCTTGTCTCTGGATAATGATGGGGCTTTTAAGGATTTCTCTGGAACAATACGTTGTGAAGATCCCAATCCCGATCTTTACACTTTTGTTGGGAACTTTGAGTATGAACATCAGGTTTATCCTCTTGATCCTGGTCAAATTCTTCTCCGAGATTCAAAGCTTAGGAACACTGATCATGTCTATGGAGTGGTCATTTTCACTGGACATGACAGCAAAGTCATGCAGAATTCTACCAAATCCCCTTCAAAAAGAAGCACAATAGAAAAAAAGATGGATTATATCATATACACTCTTTTCACTGTCCTTATATTGATATCTTTTATTAGTTCGATAGGATTTGTTTTCAAGACCAAATACCAAACCCCAAAGTGGTGGTATTTACGACCTGGCAATATTGAATACCAGTTTGACCCTGGAAAACTTGGATTGGCTGGGATGAGCCATCTGATTACTGCACTCATTCTATATGGATATTTGATACCCATCTCGCTTTATGTTTCAATTGAGTTTGTGAAGGTATTACAGGCAACCTTCATTAACCAAGACATTCAAATGTATGATGATGAATCTGGTACTCCAGCTGAAGCACGGACTTCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACTATCCTATCTGATAAAACTGGCACTTTAACCTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTGCGTATGGTGTTCGTTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGAGCAGGAATTGAATCTCTCTAATTTCCCCATGCGTAAAGAGAGTAACGTGCCATGGGAAAATATCACAGAAGATGAAGAAACTGAATTGGGGACTGCTGTTACTTCCAAGGATGATGGAGCTCGAAGGCCTGCCATAAAGGGATTTGGGTTTGAAGATGATCGCCTTATGAATGGTAATTGGTTGAAAGAACCCAATGCCGATGTCCTTTTGCTGTTTTTCCGGATATTAGCAGTTTGCCATACAGCCATTCCTGAACTGAACGAGGAGACTGAGAGTTGTACATATGAAGCCGAATCACCTGATGAAGGAGCTTTTCTAGTAGCAGCCAGAGAATTTGGTTTTGAATTTTATAGGAGAACTCAATCAAGTGTTGCCATTCGTGAAAGATTTTCTGCTTCAGGTCAAGTGGTTCAAAGAGAATATAAAATTTTGAATCTGCTGGACTTTACTAGCAAAAGAAAGCGCATGTCAGTCATTGTGCGTGATGAAGAGGGAAGCATCATTCTTTTCTGCAAAGGAGCTGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAAATGTATTTGGAGGCTACTACTAGACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACGCTAGCTCTGGCTTACAGAAAGCTTGATGACCAAGAGTACTCTGATTGGAATAATGAGTTTCAGAAGGCCAAGACAGCTGTTGGGTCTGAGAGAGACACAATGCTTGAGCAGGTTTCAGATGTTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCAGTGGAAGATAAACTACAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACTGCAATCAACATTGGATTCGCTTGTAGTTTACTTAGACAGGGCATGAAGCAAATCTGTATCACAATGAATTCAGATTCTGTAACTAATGATGGGAAAGAGGTTATCAAAGGCAACATCTTGAATCAAATCACCAATGCCTCACAAATGATAAAGCTGGAAAAGGATCCACATGCTGCGTTTGCATTAATTATTGACGGAAAAACTCTAACATATGCTTTAGAAGATGATGTCAAGCACCAATTTTTGGGATTGGCTGTTGGTTGCGCATCTGTCATTTGCTGTCGTGTGTCTCCAAAGCAAAAAGCATTGGTAACAAGGTTAGTGAAAGAAGGAACTGGGAAGACCACTTTAGCCATAGGTGATGGTGCAAATGATGTTGGAATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTAATGGCTAGTGACTTTGCTATTGCCCAGTTCCGGTTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGCTACAAGAGAATTGCACAAATGATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACCATATTCTATTTTGAGGCCTTTGCGGGCTTCTCTGGACAATCTGTTTATGATGACTGGTACATGATATTGTTTAATGTTGTTCTTACATCATTGCCTGTCATTTCTCTTGGAGTTTTTGAGCAAGATGTTCCATCAGAAGTTTGCTTACAGTTTCCTGCACTGTATCAGCAAGGACCCAAGAATTTGTTCTTTGACTGGTATAGAATCTTGGGATGGATGGGAAATGGTCTTTATTCCTCCCTCATCATCTTCTTCCTTGTAATAATCATTTTCTATGACCAAGCTTTTCGTGCAAATGGCCAGACCACAGACATGGCTGCTGTTGGGACCACGATGTTCACTTGCATCATCTGGGCTGTCAATTGCCAGATTGCTCTGACAATGAGCCATTTCACATGGATTCAACACCTCTTTGTGTGGGGCAGCATAACCACTTGGTACGTTTTTCTCTTGTTATATGGAATGCTTCCACCACAATATTCCAAGTCTGCCTACCAACTATTGGTTGAGGTTCTTGCTCCTGCTCCTATTTATTGGGCAGCAACCCTATTAGTAACAATCGCATGCGTTCTTCCTTATCTTGCCCACATATCCTTCCAAAGATGTTTTAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAAGACATTGAAGATCAACACATGTGGACCAGGGAGCGGTCTAAAGCACGGCACGAAACGAAGATTGGATTCACGGCAAGAGTGGAAGCAAAGATTAGGCAGTTTAAAGGCAAGCTGCAGAAGAAGCAGCAGTCTTCACTGGGGGCTTTCTCCCCATCATGA 3675 0.4218 MARGRIRARLRRSHLYTFGGCLRPTTTEEVPHPLQGPGYSRTVYCNQPQLLEKNSLFYCKNDVSTTKYNVITFFPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMAKEALEDSRRFLQDVKVNHRKASLHKGNGDFGLRSWQKIMVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDGAFKDFSGTIRCEDPNPDLYTFVGNFEYEHQVYPLDPGQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVFKTKYQTPKWWYLRPGNIEYQFDPGKLGLAGMSHLITALILYGYLIPISLYVSIEFVKVLQATFINQDIQMYDDESGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMASDLEEQELNLSNFPMRKESNVPWENITEDEETELGTAVTSKDDGARRPAIKGFGFEDDRLMNGNWLKEPNADVLLLFFRILAVCHTAIPELNEETESCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVAIRERFSASGQVVQREYKILNLLDFTSKRKRMSVIVRDEEGSIILFCKGADSIIFDRLSKNGKMYLEATTRHLNEYGEAGLRTLALAYRKLDDQEYSDWNNEFQKAKTAVGSERDTMLEQVSDVMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICITMNSDSVTNDGKEVIKGNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLGLAVGCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFAIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLIIFFLVIIIFYDQAFRANGQTTDMAAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLFVWGSITTWYVFLLLYGMLPPQYSKSAYQLLVEVLAPAPIYWAATLLVTIACVLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARHETKIGFTARVEAKIRQFKGKLQKKQQSSLGAFSPS* 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3578 1224 Gene3D - 720 920 IPR023214 -
Gso11g3578 1224 Gene3D - 578 700 IPR023299 GO:0000166
Gso11g3578 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 908 1158 IPR032630 -
Gso11g3578 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Gso11g3578 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1154 IPR023298 -
Gso11g3578 1224 Gene3D - 420 432 IPR023214 -
Gso11g3578 1224 SFLD p-type atpase 405 931 IPR044492 -
Gso11g3578 1224 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 58 1166 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Gso11g3578 1224 SUPERFAMILY HAD-like 411 924 IPR036412 -
Gso11g3578 1224 Coils Coil 449 469 - -
Gso11g3578 1224 Gene3D - 114 289 - -
Gso11g3578 1224 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1215 - -
Gso11g3578 1224 SFLD C1.7: P-type atpase like 405 931 - -
Gso11g3578 1224 Pfam Cation transport ATPase (P-type) 546 651 - -
Gso11g3578 1224 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Gso11g3578 1224 PRINTS P-type cation-transporting ATPase superfamily signature 880 899 - -
Gso11g3578 1224 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 846 961 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso11g3578 1224 CDD P-type_ATPase_APLT_Dnf-like 61 1033 - -
Gso11g3578 1224 Gene3D - 433 457 IPR023299 GO:0000166
Gso11g3578 1224 SUPERFAMILY Calcium ATPase, transduction domain A 149 287 IPR008250 -
Gso11g3578 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1215 - -
Gso11g3578 1224 Pfam Phospholipid-translocating ATPase N-terminal 43 110 IPR032631 -
Gso11g3578 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 687 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3578 Gso-Chr11 51494715 51502064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3578 1 1222 Primary Pumps ATPases AT1G17500 75.245 0.0 1924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3578 K01530 - gmx:100778710 2422.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0229 15 2100050 2106914 Gso11g3578 11 51494715 51502064 GST
Gso11g3578 11 51494715 51502064 Gso7g0063 7 564528 571253 PCT
Gso11g3578 11 51494715 51502064 Gso8g1578 8 15383097 15390099 PCT
Gso7g0063 7 564528 571253 Gso11g3578 11 51494715 51502064 PCT
Gso8g1578 8 15383097 15390099 Gso11g3578 11 51494715 51502064 PCT