Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3567 ATGGAGGCGCTAAGTCGCTCCGTGGAAGACGTATTCGAGGATTTCAAGGGCCGAAGAGCCGGCATCATCAAAGCTCTTACCACCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATCACCTAATGAGCAATGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTCACAGGAATCGACTATTCAGTATGATCAATGAACTACCAACAATATTTGAAGTTGTTACAGCAAAGAAACAAGTTAAAGAGAAGTCTTCGGTTTCAAACAACAGTGGCAGCAAATCTAAGTCTAACTCTAAAGCGCGGGCTTCCGAAACCCAGGGCAGACAATCAAAGCCATTACAACCAAAAGATGAGGATGAAGGACTAGAAGAGGAAGATAATGATGAACATGGAGATACCTTGTGTGGGGCATGTAGTGAGAATTATGGTACCGATGAGTTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATCACCCCTGCCAGAGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCTCGCTAA 741 0.4345 MEALSRSVEDVFEDFKGRRAGIIKALTTDVEDFYSQCDPEKENLCLYGSPNEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTHRNRLFSMINELPTIFEVVTAKKQVKEKSSVSNNSGSKSKSNSKARASETQGRQSKPLQPKDEDEGLEEEDNDEHGDTLCGACSENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3567 246 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Gso11g3567 246 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 246 - -
Gso11g3567 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 242 IPR013083 -
Gso11g3567 246 MobiDBLite consensus disorder prediction 141 169 - -
Gso11g3567 246 SUPERFAMILY FYVE/PHD zinc finger 183 244 IPR011011 -
Gso11g3567 246 SMART PHD_3 193 241 IPR001965 -
Gso11g3567 246 CDD PHD_AL_plant 193 243 IPR044104 -
Gso11g3567 246 ProSitePatterns Zinc finger PHD-type signature. 194 240 IPR019786 -
Gso11g3567 246 PANTHER CPG BINDING PROTEIN 1 246 IPR045104 GO:0006355|GO:0042393
Gso11g3567 246 MobiDBLite consensus disorder prediction 141 189 - -
Gso11g3567 246 ProSiteProfiles Zinc finger PHD-type profile. 191 243 IPR019787 -
Gso11g3567 246 Pfam PHD-finger 194 243 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3567 Gso-Chr11 51402655 51406270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3567 6 246 Alfin-like Transcription Factor Family AT3G42790 73.859 1.23e-121 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gso11g3567 Alfin 8e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3567 - - gmx:100170696 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0242 15 2199107 2204116 Gso11g3567 11 51402655 51406270 GST
Gso11g3567 11 51402655 51406270 Gso7g0315 7 2938424 2942273 PCT
Gso11g3567 11 51402655 51406270 Gso16g0036 16 385195 389237 PCT
Gso7g0315 7 2938424 2942273 Gso11g3567 11 51402655 51406270 PCT
Gso16g0036 16 385195 389237 Gso11g3567 11 51402655 51406270 PCT