Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3557 ATGGAATACCCTTTTTCCCCAAAGGATAGAGTAATTGGGGATTGGCAATCTTCTGGAGCTCAGTTGGAGGGATCAGCATCATTAGATGGCAGAATGAGCAATTCAATATCAGAGGATATGCCCAATAGCTTTTCTGAGCTCATGAACTTTGATACTTATGCTGGGTTGTGCTACAGCCCATCCATAACGGATCAGATTTTGGCTAATGAGCTTCCATCATTTGCCCCATTATCATATCCATTGCCTGATGGGTTCAATCCAGTCCAACTGAACAGTGGGCAATGCTGTATGTCAGGAGTTGGCAGAAATAACAATGATACCGAAAACTCTTCCCTTTATGGGGAGAAAGTTGTTTGTCAGCAAATGGACACCCTACTTGGTTTCTTAAACGACACAAACGAAGCAAACAACTTGAATTCTAAGCTAAAAATTAATGTCTCTTCTCAACATCTTAATAACTCTGATACAGGCAATTATATGATGTCTAGGCCACCTGGCCTGTCACTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGGATGGTGACCAATTCATCTTAAGCACGAGTGAGCAACCTTATTTGCTAGATCAAATGCTTGCAGGGTATCGTGAAGTGTCCAGGACATTTACATTTTCTGCAGAAGGAAAATCTGGTTGTTCCCTAGGACTTCCTGGTCGTGTGTTTACCTCCAAAGTCCCTGAGTGGACTTCAAATGTTGGTTATTACAGCATGAGCGAGTACTTAAGGTTCGAGCATGCAATTAATCACAAGGTTTGTGGATCAATTGCATTTCCCATATTTGATCTGCATTCTGAACTGCCATGCTGTGCTGTACTGGAACTTGTCACCACAAATGAAAAGCCAGATTTTGACAGAGAATTGGAAATTGTTTGTCGTGCACTACAGCTTGTAAATTTAAGGACTGCCAAGCCTCTCCGATGTCTTCCCCAGTGTCTTTCAAACAACAAAAAGGCTACTTTGACTGAGATAGTTGATGTGTTACGATCTGTCTGTCATGCACATAGGTTACCGCTGGGACTGACATGGATTCCCTGTTGTTTCACTGAGTGCTCAAGAGGTGAAGCTTCAAGCATACGAATTGAAGGTGGTCATTCAACTTCTAGAGGTAAAAACATACTGTGCCTTGAAGAATCTGCTTGCTATATTACTGATAGAGCAATGGGAGGATTTGTCCGTGCATGCATGGAACATCGTCTTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCTTTCTTCTATCCTGATGTGAAGACATATGATATTAGTGAATACCCACTTGTCCATCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAATATGAAAGGTAGTTCAGAGCAGCAACTTTTATTAGACAACCTCTCAGGTACCATGCAGAGAATTTGTAGTAGTTTGAGGACAGTTTCAGAAACCGAATTATCAGGAATGGAAAGCTTAGCAGTGGGGCTTGGAAAGAAAAATGCCCCCAGTTTTTTTCCTTTATCAAGTAGAAACTCTGCAATACCATTAATAAATGGTGACTGCGATTCTGTCCAGAAGGCAACTAACCTAAGGGACAATGAAATTGAGTCTTCTCCTAACCAGGAAAGAAATGGATCAAAAAGACAGGTCCAGAAAAATAGAAGTACATCAGAGAAGAATGTTAGCTTGAGTGTCCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCCGCAAAAAACATTGGTGTTTGCCCAACGACTCTGAAAAGGATATGCAGACAACATGGAATTCCAAGGTGGCCATCCCGCAAGATTAATAAAGTGAATCGATCATTGAAGAAGATACAGACGGTGCTTGACTCTGTCCAGGGCGTAGAAGGAGGGTTGAAGTTTGATCCATCTATGGGGGCATTTGTGGCAGGAGGGTCAATCATCCAGGAAATTGATGCACATAAAAGTACTATAAAAGACCCTGTGCCTGTTGCACAAGATGCATTCTCAGTACGACCAGCACCTTGTAGTGAAGGTGAGAATTTTTCAATTAAGTTGGAGGGAAAATTGAAGAAAACCAATGTTTCTTCAGTTAATTACAGTGAAGATTCAAAATCAATGGCAATCAATGATGGGTCGTGCCAGACGGCAAGCCTTTGCACCAAGGTGCAGGATTGTCCTGAACAAGCTTGTTTGGGTTCTGTTCTTGCAAAAGAACATGATAAACGAATTCTGAACAAGGGTGGTTTGAGTGTAGAAAAATTTAAACGCAATATTGTTGGCCAGAGTTCAAAAACTTTGATTGGTGATGAGATGGACATTGGTGTAGATGGGGATGATGGAGTTGTTGAACGTAACCACCCTACTTCCTCAAGCTTGATAGACTCATCTAATGGCTCTGGTTCAATGATGCATAGCAGTTCATCAGGTTCTCAGAGCTTTAAGAACCAGGATCAGTCCAAAGTCAAATCAACCATTGTTGATAGTAGGTCGAAACTAATTGTCAAAGCTACCTATAGAGAAGACACCATTCGTTTCACGTTTGATCCATGTGCAGGTTGTTTCAGTCTATATGAAGAAGTTGCGGCAAGATTCAAACTACAAAATGGGTTATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATAATGCTGATTTGCAAGAGTGTATAGAAATATTGGATGATATTGGCACACGTAGCGTCAGGTTTCTTGTTCGTGATATGCCTTCCGTTTTAGGCAGTTCTGGCAGTAGCAATAGCTACTTGGGAGGCAGCTCATAG 2907 0.4145 MEYPFSPKDRVIGDWQSSGAQLEGSASLDGRMSNSISEDMPNSFSELMNFDTYAGLCYSPSITDQILANELPSFAPLSYPLPDGFNPVQLNSGQCCMSGVGRNNNDTENSSLYGEKVVCQQMDTLLGFLNDTNEANNLNSKLKINVSSQHLNNSDTGNYMMSRPPGLSLDERMLRALSFFKESAGGGILAQVWVPIKDGDQFILSTSEQPYLLDQMLAGYREVSRTFTFSAEGKSGCSLGLPGRVFTSKVPEWTSNVGYYSMSEYLRFEHAINHKVCGSIAFPIFDLHSELPCCAVLELVTTNEKPDFDRELEIVCRALQLVNLRTAKPLRCLPQCLSNNKKATLTEIVDVLRSVCHAHRLPLGLTWIPCCFTECSRGEASSIRIEGGHSTSRGKNILCLEESACYITDRAMGGFVRACMEHRLEEGKGIAGKALQSNHPFFYPDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMKGSSEQQLLLDNLSGTMQRICSSLRTVSETELSGMESLAVGLGKKNAPSFFPLSSRNSAIPLINGDCDSVQKATNLRDNEIESSPNQERNGSKRQVQKNRSTSEKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGIPRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSMGAFVAGGSIIQEIDAHKSTIKDPVPVAQDAFSVRPAPCSEGENFSIKLEGKLKKTNVSSVNYSEDSKSMAINDGSCQTASLCTKVQDCPEQACLGSVLAKEHDKRILNKGGLSVEKFKRNIVGQSSKTLIGDEMDIGVDGDDGVVERNHPTSSSLIDSSNGSGSMMHSSSSGSQSFKNQDQSKVKSTIVDSRSKLIVKATYREDTIRFTFDPCAGCFSLYEEVAARFKLQNGLFQLKYLDDEEEWVMLVNNADLQECIEILDDIGTRSVRFLVRDMPSVLGSSGSSNSYLGGSS* 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3557 968 MobiDBLite consensus disorder prediction 815 855 - -
Gso11g3557 968 MobiDBLite consensus disorder prediction 821 855 - -
Gso11g3557 968 MobiDBLite consensus disorder prediction 570 585 - -
Gso11g3557 968 ProSiteProfiles PB1 domain profile. 868 950 IPR000270 GO:0005515
Gso11g3557 968 Pfam RWP-RK domain 599 647 IPR003035 -
Gso11g3557 968 PANTHER PROTEIN NLP8 7 723 IPR045012 GO:0003700
Gso11g3557 968 PANTHER PROTEIN NLP8 723 964 IPR045012 GO:0003700
Gso11g3557 968 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 723 964 - -
Gso11g3557 968 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 7 723 - -
Gso11g3557 968 Gene3D - 865 951 - -
Gso11g3557 968 ProSiteProfiles RWP-RK domain profile. 581 667 IPR003035 -
Gso11g3557 968 SUPERFAMILY CAD & PB1 domains 864 953 - -
Gso11g3557 968 Pfam PB1 domain 871 949 IPR000270 GO:0005515
Gso11g3557 968 MobiDBLite consensus disorder prediction 570 598 - -
Gso11g3557 968 SMART PB1_new 868 950 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3557 Gso-Chr11 51345905 51353230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3557 1 965 NLP Transcription Factor Family AT2G43500 49.694 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso11g3557 PB1 2.1e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3557 - - gmx:100812210 1846.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0247 15 2236895 2245159 Gso11g3557 11 51345905 51353230 GST
Gso11g3557 11 51345905 51353230 Gso12g0416 12 3630531 3636777 PCT
Gso11g3557 11 51345905 51353230 Gso11g1070 11 9548784 9554732 PCT
Gso12g0416 12 3630531 3636777 Gso11g3557 11 51345905 51353230 PCT
Gso11g1070 11 9548784 9554732 Gso11g3557 11 51345905 51353230 PCT