Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3551 ATGGACATAAGTCCTTACACTCCTCCAAAGAAGCTATCATCACATTCCACCATCCACTCCAATAACCATAACAACATCATTGCCGATGAGGCTACAACGTTAGATCATAACAACATCATGCACCGCAGCAACCACAGCCACACGTCCACGAGCCGTTCTTCTGACTCAGGTGAGCTTAGTGAAGACGGAAAATGGGCCCCCAAACTTCTCAGAGAGTGTGCAAAAGCAATATCAGAGAGAGACTCAACCAAAACACACCATCTTCTTTGGATGCTTAACGAGCTTGCTTCGCCTTATGGAGATTGTGATCAGAAACTCGCCTCTTATTTCTTGCAAGCCTTGTTCTGCAGAGCCACGGAGTCTGGTGAGAGATGCTATAAAACTCTTTCCTCCGTGGCTGAGAAGAACCACTCGTTTGACTCAGCGAGGAGGTTGATACTCAAGTTTCAAGAGGTAAGTCCCTGGACCACGTTCGGACATGTGGCCTCCAACGGGGCGCTTTTGGAGGCCTTGGAAGGCGAGCCAAAGCTCCACATCATCGACCTCAGCAGCACCCTTTGCACGCAGTGGCCAACACTCCTTGAAGCGTTGGCCACGCGAAATGATGAGACGCCTCATCTTAAACTCACAGTGGTGGCCATAGCTGGGTCGGTGATGAAAGAAGTTGGTCAACGGATGGAGAAGTTTGCAAGACTCATGGGCGTGCCCTTTGAATTCAACGTCATTAGTGGATTAAGCCAAATCACCAAAGAAGGCTTGGGGGTTCAAGAAGATGAGGCTATAGCTGTGAATTGCGTTGGGGCATTGAGAAGAGTCCAAGTTGAAGAGAGGGAAAACTTGATTCGTGTGTTTAAGTCTCTTGGTCCTAAAGTGGTAACCGTTGTTGAAGAAGAAGCTGATTTTTGCAGCTCGAGGGGGGATTTTTTTAAGTGCTTTGAAGAGTGTCTCAAGTTCTACACACTTTACTTCGAGATGTTGAAGGAGAGTTTCCCTCCAACGAGTAACGAGAGGTTGATGTTGGAGAGGGAGTGTTCGAGGAGCATAGTTAGGGTTTTGGCTTGTTGTGGTACTGGTCATGAGTTTGAAGATGATCATGGAGAGTTTGATTGCTGTGAGAGGAGGGAGAGAGGGATTCAGTGGTGTGAGAGGCTGAGGAATGCGTTTTCGCCAAGTGGATTCAGCGATGATGTGGTGGATGATGTGAAAGCATTGCTCAAGAGGTACCAATCAGGGTGGTCACTTGTGGTGACTCAAGGAGATGAACATATCTCAGGGATTTACTTGACATGGAAGGAGGAACCAGTGGTTTGGGCATCAGCATGGAAACCCTAG 1332 0.4797 MDISPYTPPKKLSSHSTIHSNNHNNIIADEATTLDHNNIMHRSNHSHTSTSRSSDSGELSEDGKWAPKLLRECAKAISERDSTKTHHLLWMLNELASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHSFDSARRLILKFQEVSPWTTFGHVASNGALLEALEGEPKLHIIDLSSTLCTQWPTLLEALATRNDETPHLKLTVVAIAGSVMKEVGQRMEKFARLMGVPFEFNVISGLSQITKEGLGVQEDEAIAVNCVGALRRVQVEERENLIRVFKSLGPKVVTVVEEEADFCSSRGDFFKCFEECLKFYTLYFEMLKESFPPTSNERLMLERECSRSIVRVLACCGTGHEFEDDHGEFDCCERRERGIQWCERLRNAFSPSGFSDDVVDDVKALLKRYQSGWSLVVTQGDEHISGIYLTWKEEPVVWASAWKP* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3551 443 Pfam GRAS domain family 68 442 IPR005202 -
Gso11g3551 443 MobiDBLite consensus disorder prediction 40 56 - -
Gso11g3551 443 MobiDBLite consensus disorder prediction 40 62 - -
Gso11g3551 443 MobiDBLite consensus disorder prediction 1 20 - -
Gso11g3551 443 ProSiteProfiles GRAS family profile. 57 442 IPR005202 -
Gso11g3551 443 PANTHER PROTEIN SHORT-ROOT-LIKE 39 442 - -
Gso11g3551 443 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 39 442 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3551 Gso-Chr11 51294657 51296551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3551 41 443 GRAS Transcription Factor Family AT4G37650 50.820 5.03e-144 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso11g3551 GRAS 1.1e-92 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3551 - - gmx:100818806 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0253 15 2296400 2298375 Gso11g3551 11 51294657 51296551 GST
Gso7g0346 7 3248456 3250676 Gso11g3551 11 51294657 51296551 PCT
Gso16g0060 16 681975 684173 Gso11g3551 11 51294657 51296551 PCT