Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3547 ATGCCGCCTCCTTCCAAATTCGTGGAAGGCGAGGAGTTGGGAAGCCCCACCAACAACCTCTGGGTCGGAAATCTGCCGCCGGAGGTCATAGATTCCAATCTCATGGAACTATTCGCTCCGTACGGTTCTCTGGACTCACTCATCTCCTATTCCTCGCGCACCTTCGCTTTCGTCTTGTTCAGGCGCGTCGAAGACGCTAAGGCCGCAAAATCCAACTTGCAAGGCGCATGGCTCCGTGGGTTTCAAATCAGAATCGAGTTTGCCAGACCGGCAAAGCCGTGTAAACAATTGTGGGTGGGTGGTTTTAGTCCCGCTGTTGCGAGGGAAGATTTGGAAGCCGAGTTTTGGAAATTCGGTAAGATTGAGGATTTTAAGTTCTTTGTAGACCGCGGTACTGCGTGTGTTGAGTTTCTCAATCTGGATGATGCTGTTCGGGCCATGAAAGTCATGAACGGGAAGCGGTTAGGTGGAGGCCAGATTTGTGTAGACTTCCTTCGACCACAATCTACGAGAAGAGATTTTTTGGTTGATCATGGGCAGTTTCAGACTAGACCACAGCATTTACAACCTTCAATTGGGAGGAATAGTCAACCCAGCAAAATTTTGTGGATAGGTTTTCCTCCTTCTTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGATAAAATCAAGATTTTTCCTTCTAGACATTATTCATTTGTTGAATTTAGAAGCACTGATGAAGCTCAGCGTGCCAAAGAGGGTCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACGATTATGTATTCAAGCAGTGAGCCGGCACCTGGAAAAGATTACCCTGGCTTTTATCCTGGAGGTAAAGAGCCGATACGTGATGGATTAGTTAATGAGTATCCATTTCGACTGCAACAAACAGATGTATTTGGTCATAATCGTCTGATGGTTCCAAATAATTTTCCTGGACAATTGCCACCCGGACATAATGTCCCAATGGGACCTTTTGGTTCTCAAGGTCTTGAACCTCTTATTTCCGGTCCTGATTTTAATGAGATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCAGGAATGCTTCCTTCTCCTGTGCCTGGTTCTGGTATTGGGCCTCCTACAAGATCCACCTCTGGTGCATGGGATGTACTTGGCATAAACCAATTTCAAAGAGATTCTAAACGTTCGAGGATACATGATGCTTGGCTCATTGGTGATGCTCCATTTCCTTTAAGGTATATAGATGACCGTGGATTAGGACTAGAACAACCATTTGCAATTGATCCAGTTATTGATGGAGGTGGTTCTGGTCCAAACAGTCACCTTGGTCCAGTCGGCACTAGGATCACATCTGGAGTACCTGATTCTGTCCAACCTGATATTGATCATATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTTGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGAACTGAGATTCCTGGTGTTGTAGATTGTGCTGCTAGGACTGGATTGGATATGCTAAAGAAGCACTATGCTGATGCAATTGGCTTTGACATTGTTTTTTTTCTTCCTGATAGCGAAGAGGATTTTGCTTCATATACTGAATTCCTTCACTACCTCAAAGCAAAACATCGTGCTGGTATTGCCAAGTTAGTTGATAACACCACTTTATTTTTGGTACCACCTTCTGATTTATTGACCAAGGTTTTTAAAGTCACGGGACCTGAACGTTTATATGGTGTGGTTCTTAAATTTCCATCAGTTCCAAGTAGCACATATATGCAACAAGCAATGCATTTGCCTTCACCCTCTACTCAGTATATGCAACAGATTCCCCCTTCACAAGTTGAGTATGGTTCAATATCTGCAAAGGAGGAACAGGTTTTACCAATGGATTATAACAGATTGTTGCATGAGGATTCTAAGCATCTTCCAAAACCACTTCATCCGGCTACAAGTGTCCCCTCTTCATCTCATTCTGTTCCTTCTGATTATGCTCTTACTCATACTGCTTCTGTATCCCAAGCTGGAGTTACATGGACACCTGAACTTATTGCAAGTTTAACTTCTTTACTCCCTGCAACTACACAATCATCAACCCCTGGCGGTCAAATGGGAATGGCTGGTCCCTCTACTGTGAAGTCACCTTTTCCTTCTGTTGCACCTAATAATGGAAATCAATCTCATTTGTGGAAACAAGATAAGCAAATTGCTGATCCTTCTAGTCATCCTCCTCAACAGTTTGGGAGTATTCATAATGCTCAATATCAACCTTATCCACCTGCATCTTCTACTGACAACCCTGCTCAAGTGGTCTCTGGCAGTTCTCGTTTCCAAGATACTGCTTCCAGTCTTAAGCAGCTAGGTGCTGTTTTGTCTACACCCATGACTAATTTCATCTTACCTCCTCAAAATGGACAGGTAGCTGTGTCCCTTCAAGTCAGTCAACAGTATCAGGAAGTCCCACACGGCACTGAGAAAGGCTATGGAGTGGTTCAGGGAACAGATGCCTCTGTTTTATATAGTTCTAAGGCGTTCCAACAACCTAATAATTTTATTTCCTCATCTAACCAAGTTGCCAATGCTGGATCACAGCAACAATCTGTGATACCCTATACAGTGGACAAAGTTAATTTAGGGCCCACAAATCAGCAACTTCAACCTGCGTTATTTGGAGTTGGCCAGGGAGTGTCAGAATTGGAGGCTGATAAGAACCAGAGATACCAGTCAACACTACAGTTTGCTGTCAACCTTCTCCAGCAGATACAACAACAGCAAACACAAGGAGGGCATGGGCCAGGAAATCAACAATAA 2835 0.4392 MPPPSKFVEGEELGSPTNNLWVGNLPPEVIDSNLMELFAPYGSLDSLISYSSRTFAFVLFRRVEDAKAAKSNLQGAWLRGFQIRIEFARPAKPCKQLWVGGFSPAVAREDLEAEFWKFGKIEDFKFFVDRGTACVEFLNLDDAVRAMKVMNGKRLGGGQICVDFLRPQSTRRDFLVDHGQFQTRPQHLQPSIGRNSQPSKILWIGFPPSFQIDEQMLHNAMILFGEIDKIKIFPSRHYSFVEFRSTDEAQRAKEGLQGRLFNDPRITIMYSSSEPAPGKDYPGFYPGGKEPIRDGLVNEYPFRLQQTDVFGHNRLMVPNNFPGQLPPGHNVPMGPFGSQGLEPLISGPDFNEMGPSWKRPSPPAPGMLPSPVPGSGIGPPTRSTSGAWDVLGINQFQRDSKRSRIHDAWLIGDAPFPLRYIDDRGLGLEQPFAIDPVIDGGGSGPNSHLGPVGTRITSGVPDSVQPDIDHIWRGIIAKGGTPVCCARCVPIGKGIGTEIPGVVDCAARTGLDMLKKHYADAIGFDIVFFLPDSEEDFASYTEFLHYLKAKHRAGIAKLVDNTTLFLVPPSDLLTKVFKVTGPERLYGVVLKFPSVPSSTYMQQAMHLPSPSTQYMQQIPPSQVEYGSISAKEEQVLPMDYNRLLHEDSKHLPKPLHPATSVPSSSHSVPSDYALTHTASVSQAGVTWTPELIASLTSLLPATTQSSTPGGQMGMAGPSTVKSPFPSVAPNNGNQSHLWKQDKQIADPSSHPPQQFGSIHNAQYQPYPPASSTDNPAQVVSGSSRFQDTASSLKQLGAVLSTPMTNFILPPQNGQVAVSLQVSQQYQEVPHGTEKGYGVVQGTDASVLYSSKAFQQPNNFISSSNQVANAGSQQQSVIPYTVDKVNLGPTNQQLQPALFGVGQGVSELEADKNQRYQSTLQFAVNLLQQIQQQQTQGGHGPGNQQ* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3547 944 MobiDBLite consensus disorder prediction 723 785 - -
Gso11g3547 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 158 IPR000504 GO:0003723
Gso11g3547 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Gso11g3547 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Gso11g3547 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Gso11g3547 944 SMART rrm1_1 96 163 IPR000504 GO:0003723
Gso11g3547 944 SMART rrm1_1 19 86 IPR000504 GO:0003723
Gso11g3547 944 SMART rrm1_1 201 269 IPR000504 GO:0003723
Gso11g3547 944 CDD RRM3_Spen 97 166 - -
Gso11g3547 944 MobiDBLite consensus disorder prediction 702 785 - -
Gso11g3547 944 Pfam SPOC domain 466 583 IPR012921 -
Gso11g3547 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Gso11g3547 944 Coils Coil 912 932 - -
Gso11g3547 944 CDD RRM3_Spen 20 89 - -
Gso11g3547 944 Gene3D - 195 277 IPR012677 -
Gso11g3547 944 MobiDBLite consensus disorder prediction 649 669 - -
Gso11g3547 944 SUPERFAMILY RNA-binding domain, RBD 184 275 IPR035979 GO:0003676
Gso11g3547 944 Gene3D - 92 194 IPR012677 -
Gso11g3547 944 PANTHER RNA RECOGNITION MOTIF-CONTAINING 9 944 - -
Gso11g3547 944 Gene3D - 14 91 IPR012677 -
Gso11g3547 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Gso11g3547 944 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 9 944 - -
Gso11g3547 944 CDD RRM3_Spen 202 271 - -
Gso11g3547 944 SUPERFAMILY RNA-binding domain, RBD 16 169 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3547 Gso-Chr11 51250454 51262194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3547 19 262 Eukaryotic Initiation Factors Gene Family AT2G36660 24.812 5.32e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3547 - - gmx:100810601 1863.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0258 15 2345415 2356692 Gso11g3547 11 51250454 51262194 GST
Gso11g3547 11 51250454 51262194 Gso12g0425 12 3707617 3719568 PCT
Gso11g3547 11 51250454 51262194 Gso11g1077 11 9623671 9634980 PCT
Gso12g0425 12 3707617 3719568 Gso11g3547 11 51250454 51262194 PCT
Gso11g1077 11 9623671 9634980 Gso11g3547 11 51250454 51262194 PCT