Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3546 ATGGATAAAGACAAATCTCTAGGTTTGCCACCTCCGTCTGGACGTTATTCCGGTTACTCGCCCACCAGAAGTGTTTTCAATGTGAAATCTGAGCCTTCGCCGTCGTCATCGTCGACGACGTCGTATCCGCCACTGGCTCTGGGAACCACCAGTTCCGAGTCTAGTCATTTTGGACATGGAATGTCCACGGATTCTAGTGGGTTTAGTCATGATATTAGCAGAATGCCTGATAATCCCCCGAGAAACAGAGGTCATAGGCGTGCTCATTCGGAGATTCTCACTTTACCGGATGATATTAGCTTCGACAGTGACCTTGGTGTTGTTGGAGCTGGTGATGGGCCTTCGTTCTCCGATGACGCCGAGGAGGACTTGCTTTCCATGTACCTTGATATGGATAAGTTCAATTCATCGTCGGCGACATCCACCTTTCAAATGGGCGAGCCGTCTAATGCTGTGGGAGCATCGGCTTCAATGCCGGGGTCAGGGGCACCCAACTATTCTGCAGAGAATGCTGTTTTTGGGACTAATGAAAGGCCCAGAGTTAGACACCAGCATAGTCAATCCATGGACGGGTCAACCACCATCAAGCCTGAGTTGCTGGTCTCGGGTTCGGAAGACATGTCGGCGGCTGATTCCAAAAAAGCAATATCAGCTGCCAAGCTTGCTGAGCTTGCCTTGATTGACCCCAAACGTGCAAAAAGGATATGGGCAAATAGGCAGTCTGCTGCGAGGTCAAAAGAGAGAAAGATGCGATACATTGCTGAGCTTGAAAGGAAGGTGCAAACATTGCAAACAGAAGCAACATCTTTGTCTGCACAATTAACTCTCTTGCAGAGAGATACAAATGGCTTAAATTCTGAGAACAGTGAACTGAAGCTGCGGTTGCAAACCATGGAGCAACAAGTTCACTTGCAAGATGCATTAAACGATGCATTAAAAGAGGAAATTCAGCATTTGAAAATATTGACTGGGCAAGTTATGGCACCTAATGGAGGACCTATGATGAAGCTTGCTTCTTTTGGAGGGGGGCAGCAATTCTATCCCAATAATCATGTCATGCACACTCTTTTAGCTGCACAACAGTTTCAACAGCTACAAATTCACCCTCAAAAGCAGCAGCAGCAACAACATCAGCATCAGTTTCAGCAGTTTCAGCAGCAACATCAGCATCAGCATCAGCAGCACCAACAATCAAGTGACTTGAAAATGAGAGAAACTTCACCTACTCCATGCCCCAAAGACAATACTTCGTCAGATGTAAATCCTTCTGGAGCCAAGGATTGTTGA 1287 0.4685 MDKDKSLGLPPPSGRYSGYSPTRSVFNVKSEPSPSSSSTTSYPPLALGTTSSESSHFGHGMSTDSSGFSHDISRMPDNPPRNRGHRRAHSEILTLPDDISFDSDLGVVGAGDGPSFSDDAEEDLLSMYLDMDKFNSSSATSTFQMGEPSNAVGASASMPGSGAPNYSAENAVFGTNERPRVRHQHSQSMDGSTTIKPELLVSGSEDMSAADSKKAISAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLNSENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKILTGQVMAPNGGPMMKLASFGGGQQFYPNNHVMHTLLAAQQFQQLQIHPQKQQQQQHQHQFQQFQQQHQHQHQQHQQSSDLKMRETSPTPCPKDNTSSDVNPSGAKDC* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3546 428 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 419 - -
Gso11g3546 428 SUPERFAMILY Leucine zipper domain 230 281 IPR046347 GO:0003700|GO:0006355
Gso11g3546 428 SMART brlzneu 226 290 IPR004827 GO:0003700|GO:0006355
Gso11g3546 428 MobiDBLite consensus disorder prediction 1 87 - -
Gso11g3546 428 Coils Coil 246 315 - -
Gso11g3546 428 MobiDBLite consensus disorder prediction 17 72 - -
Gso11g3546 428 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 228 291 IPR004827 GO:0003700|GO:0006355
Gso11g3546 428 CDD bZIP_plant_RF2 231 280 IPR044759 GO:0003700|GO:0006355
Gso11g3546 428 MobiDBLite consensus disorder prediction 368 428 - -
Gso11g3546 428 Gene3D - 229 282 - -
Gso11g3546 428 MobiDBLite consensus disorder prediction 150 169 - -
Gso11g3546 428 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 6 419 - -
Gso11g3546 428 Pfam bZIP transcription factor 230 288 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3546 Gso-Chr11 51241167 51245667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3546 15 359 bZIP Transcription Factor Family AT1G06070 70.255 5.53e-166 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso11g3546 bZIP_1 4.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3546 - - gmx:778194 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0259 15 2362207 2367593 Gso11g3546 11 51241167 51245667 GST
Gso11g3546 11 51241167 51245667 Gso12g0427 12 3727769 3732715 PCT
Gso11g3546 11 51241167 51245667 Gso11g1079 11 9650998 9656264 PCT
Gso12g0427 12 3727769 3732715 Gso11g3546 11 51241167 51245667 PCT
Gso11g1079 11 9650998 9656264 Gso11g3546 11 51241167 51245667 PCT