Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3543 ATGAAAATTCAGTGTGATGTGTGTGAGAGAGCTCCGGCAACAGTGATTTGTTGTGCGGATGAGGCAGCTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAAAGGCTTCTTCTTCAATGTCTATCAAGCAAGCTTCCAAGATGTGACATTTGCCAAGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGATTGTGATGAACCAATTCATTCAGCCGGAAGCCTTTCTGCGAACCACCAGCGCTTCCTTGCTACTGGTATCCGAGTGGCATCGAGTTCTAATTGCACCAAGGACAATGAAAAAAGTCACTTGGAGCCTCCTACTAGGAATGCACAACAAGTTTCTGCGAAAATTCCTCCTCACCAAGTGCCTAGCTTCACTTCCTCTTGGGCTGTTGATGACTTATTGGAACTAACAGCCTTTGAATCACCTGAGAAAAAGGAATCTCTGCAGTTTGGAGAGCTGGAATGGCTTACAGATGTGGGTATTTTTGGTGAACAATTTGCTCAGGAAGCCTTGGCTGCAGCTGAAGTACCTCAGCTTCCAGTAACTCATAACAGTAGCAGTGTTGCTTCATACAGAACTTCCAAATCCTACATGTCCCACAAAAAGCCTAGGATTGAAGTCCTAAATGATGATGATGATGAGTATTTTACTGTGCCTGATCTTGGCTAA 720 0.4444 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSSKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSNCTKDNEKSHLEPPTRNAQQVSAKIPPHQVPSFTSSWAVDDLLELTAFESPEKKESLQFGELEWLTDVGIFGEQFAQEALAAAEVPQLPVTHNSSSVASYRTSKSYMSHKKPRIEVLNDDDDEYFTVPDLG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3543 239 CDD Bbox1_BBX-like 57 98 - -
Gso11g3543 239 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 239 - -
Gso11g3543 239 Gene3D Classic Zinc Finger 1 92 - -
Gso11g3543 239 CDD Bbox1_BBX-like 5 47 - -
Gso11g3543 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Gso11g3543 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Gso11g3543 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gso11g3543 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Gso11g3543 239 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Gso11g3543 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Gso11g3543 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3543 Gso-Chr11 51226041 51228668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3543 1 161 Orphan Transcription Factor Family AT1G06040 62.353 2.33e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gso11g3543 zf-B_box 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3543 - - gmx:100814727 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0263 15 2405461 2408094 Gso11g3543 11 51226041 51228668 GST
Gso11g3543 11 51226041 51228668 Gso12g0430 12 3748356 3751709 PCT
Gso11g3543 11 51226041 51228668 Gso11g1082 11 9674858 9678063 PCT
Gso12g0430 12 3748356 3751709 Gso11g3543 11 51226041 51228668 PCT
Gso11g1082 11 9674858 9678063 Gso11g3543 11 51226041 51228668 PCT