Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3541 ATGAACCTATGGCCAGTTTTATTTGGGACTCTATTTGAGGTTGTGGTTTTTTCATGCTTGTGGTTGCAAATTTCAAGTCTTGGTTCCATGTCTTCCATTGCCGTCTCTTATGGCGACAAAGGGTCAGTATTTTGTGGCTTGAAATCAGATGGATCTCACACTGTGACCTGTTATGGAATAGACTCAGCCATAATTTATGGAACGCCAACGCATTTTCCATTCCTTGGTCTAACTGCTGGTGATGGCTTTGTGTGTGGGCTTTTAATGAGTTCTAACCAACCTTATTGTTGGGGTAGCAGTGGCCATGTTGAAATGGGTGTGCCACAGCCTATGGTTAAGGGAGCTCAGTACCTAGAGATCAGTGCTGGTGACTACCACGTTTGTGGATTGAGGAAACCATTGACTGGAAGACACAGGAACACTTCTTTGGTTGATTGTTGGGGCTACAACATGACCAACAACTATGTGTTTGATGGGCAGGTTCAATCAATCTCAGCAGGTTCTCAATTCAATTGTGGCTTGTTTTCTCAGAATAGGACTGTGTTCTGTTGGGGGGATGAGACTAGTAGCCAAGTTATTAGCATGATCCCTCAAGGCATGAGGTTCCAGAAGATCTCTGCTGGAGGGTACCATGTGTGTGGAATCTTAGAAGGGGTGAATGCTAGAGCTGTTTGCTGGGGGAGGAGCTTGTTGGATTTGGGGGAAGAGCTTTCAATTTCGTTGACGCGTTCGGGGCAAGGACAAGGTAATGTTGAATTGGCTCCAATTGATCCCATGCTTTCTGTGGTGGGAGGGAAGTTCCATGCATGTGGCATTAGGAGCTATGATCGTGGTGTGGTTTGTTGGGGCTATAGTTTCAAAGCAGGTACTCCAGTTCCTAGTGGGATTAAGGCCTTTGAGATTGGTGCTGGGAATTATTTCACCTGTGGAGTACTTGTTGAGAAATCTCTTATGCCTGTTTGTTGGGGTGTTGGCTTCCCTACCTCTCTCCCTTTGCCTGTTTCACCAAGAATGTGTAGGTCTACTCCATGTTCTCCAGGTTACTATGAAACCCAACAAAATGGTCTTTGCAAGTCCCCAGATTCTCACATTTGCATGCCTTGCAGTGCTGCTTGTCCTCCTGAGATGTATCAGAGAAGTGGATGCAATTTGAAATCTGACATACTGTGTGAATATAATTGTTCTATTTGTTCCTCACCTGAATGCCTCTCCAATTGCTCCTCTTCCTATTCCAATGCTGCCTTTGGCAAGAGAACTGAAAGATTCTGGTCTATGCAGCTGCCAGTGCTTATTGCTGAGATAGCCTTTGCTGTTTTCTTAGTTAGCATTGTGTCTATAACTGCTGTTTTGTATGTTCGCTACAAGCTAAGAAATTGTCAGTGTTCAGGGCCAAAGGTGAAGAAACTAAAAGGGAGCTCTTCAAACCAAAAGGATCAGAAATGCAAGATCCGACCGGACTTGGAGGATTTCAAGATTAGGAGGGCACAAATGTTCCCCTACGAGGAGCTTGAAAGGGCAACTAGTGGATTCAAAGAAGAGTCTATAGTGGGGAAGGGAAGTTTTTCATGTGTGTTCAAAGGAGTTCTCAAAGATGGTACTGTTGTTGCTGTTAAAAGGGCCATAGTGTCTCCCAACATGCAGAAGAATTCCAAGGAGTTTCACACCGAGCTTGACTTGCTCTCTAGGTTGAACCATGCACACTTGCTCAATCTACTAGGCTACTGTGAAGAAGGTGGAGAGAGGCTCCTTGTTTATGAGTACATGGCTCATGGCTCTTTGCATCAACACCTACATGGCAACAAGGTGATGCAAGAGCAAATGGATTGGGTGAGAAGGGTAACAATTGCAGTGCAAGCAGCTCGCGGAATCGAATATTTGCATGGATATGCTTGTCCACCCGTGATTCACAGAGACATCAAGTCTTCAAACATCCTCATAGATGAAGAACACAATGCTAGAGTGGCTGATTTTGGTTTGTCACTACTTGGTCCTGCAGATAGTAGCTCCCCACTAGCTGAACTACCAGCTGGGACTCTTGGCTATCTTGATCCTGAATACTATAGGCTTCATTATCTTACCACAAAGTCTGATGTATATAGCTTTGGTGTTCTACTTTTGGAGATTTTAAGTGGTAGAAAAGCCATTGACATGCAATTTGAAGAAGGGAACATAGTTCAATGGGCAGTGCCTCTGATCAAGTCAGGAGATATAGCTGCAATTTTGGATCCAGTTTTGAAACCTCCTCCTGATCTTGATGCCTTGAGAAGGATAGCTAATGTGGCTTGTAAAAGTGTGAGAATGAGAGGTAAGGATAGGCCTTCAATGGACAAAGTGACAACAGTTTTGGAGAGAGCACTTGCACAGTTAATGGGGAGCCCTTGTATTGAGCAGCCAATTTTGCCCACTGAGGTGGTTTTGGGAAGTAACAGATTGCACAAGAAATCATCTTCAAACAGGTCAGCCTCAGAAAGCACTGATGTGGAGGATCAGAGGTTTGAGTTTAGAGCACCATCATGGATCACTTTCCCCAGTGTCACTTCTTCTCAAAGAAGATCGGGCTCGGAGGCCGAAGTCGAGGGGAAAAATGCAGAAGGAAGGAATTTGAGCAATGTTGGAGGAGGTGGTGGTGTTTTGAGAAGTCTTGATGAAGAGATTGGTCTTGCCTCTCCTCGAGAGAGATTGTTCTTGCAACACAACTTTTAA 2703 0.4465 MNLWPVLFGTLFEVVVFSCLWLQISSLGSMSSIAVSYGDKGSVFCGLKSDGSHTVTCYGIDSAIIYGTPTHFPFLGLTAGDGFVCGLLMSSNQPYCWGSSGHVEMGVPQPMVKGAQYLEISAGDYHVCGLRKPLTGRHRNTSLVDCWGYNMTNNYVFDGQVQSISAGSQFNCGLFSQNRTVFCWGDETSSQVISMIPQGMRFQKISAGGYHVCGILEGVNARAVCWGRSLLDLGEELSISLTRSGQGQGNVELAPIDPMLSVVGGKFHACGIRSYDRGVVCWGYSFKAGTPVPSGIKAFEIGAGNYFTCGVLVEKSLMPVCWGVGFPTSLPLPVSPRMCRSTPCSPGYYETQQNGLCKSPDSHICMPCSAACPPEMYQRSGCNLKSDILCEYNCSICSSPECLSNCSSSYSNAAFGKRTERFWSMQLPVLIAEIAFAVFLVSIVSITAVLYVRYKLRNCQCSGPKVKKLKGSSSNQKDQKCKIRPDLEDFKIRRAQMFPYEELERATSGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIVSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGNKVMQEQMDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQFEEGNIVQWAVPLIKSGDIAAILDPVLKPPPDLDALRRIANVACKSVRMRGKDRPSMDKVTTVLERALAQLMGSPCIEQPILPTEVVLGSNRLHKKSSSNRSASESTDVEDQRFEFRAPSWITFPSVTSSQRRSGSEAEVEGKNAEGRNLSNVGGGGGVLRSLDEEIGLASPRERLFLQHNF* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3541 900 SMART serkin_6 510 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3541 900 Pfam Regulator of chromosome condensation (RCC1) repeat 161 191 - -
Gso11g3541 900 PANTHER RECEPTOR-LIKE KINASE 1 900 - -
Gso11g3541 900 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Gso11g3541 900 ProSiteProfiles Protein kinase domain profile. 510 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3541 900 SUPERFAMILY Protein kinase-like (PK-like) 493 782 IPR011009 -
Gso11g3541 900 MobiDBLite consensus disorder prediction 845 875 - -
Gso11g3541 900 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 900 - -
Gso11g3541 900 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Gso11g3541 900 SUPERFAMILY RCC1/BLIP-II 26 229 IPR009091 -
Gso11g3541 900 Gene3D Transferase(Phosphotransferase) domain 1 588 792 - -
Gso11g3541 900 SUPERFAMILY RCC1/BLIP-II 250 336 IPR009091 -
Gso11g3541 900 Gene3D Phosphorylase Kinase; domain 1 482 587 - -
Gso11g3541 900 Pfam Protein kinase domain 510 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3541 900 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 343 390 IPR001368 GO:0005515
Gso11g3541 900 Gene3D - 73 337 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3541 Gso-Chr11 51205169 51208864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3541 11 900 Receptor kinase-like Gene Family AT3G59420 67.478 0.0 1216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso11g3541 Pkinase 4.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3541 - - gmx:100807392 1779.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0268 15 2428970 2432182 Gso11g3541 11 51205169 51208864 GST
Gso12g0436 12 3792547 3796244 Gso11g3541 11 51205169 51208864 PCT
Gso11g1087 11 9718650 9722400 Gso11g3541 11 51205169 51208864 PCT