Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3531 ATGGATTCCGAGGACGATATGCACGACGCCAACGATGTGGAGTCCCTTGACGACGATTTCTACAGTGGCGAGACCGAGGACGCTCCCATGGATTACTACAGTGACTACGACGACGAAGCTGACGATTACTTCGACGATGCTGACGATTCTGACCGGGTTGAGTCTCGCCGCCCTGAGCAAAACTTTACAATATTGAGGGAATTGGATATCCGGCAAAGGCAGGAGGATGACATAGCTAGAGTAGCGGCAGTTCTTTCCATACCGCGGGTTTCTGCGAGCATCCTACTTCGTCACTACAACTGGAGTGTTAGTAAGGTGCATGATGCTTGGTTTGCTGATGAAGATCAAGTCCGGAAAACAGTTGGTTTGTTGGAGAAGCCAGTTTTCCAGAATTCTAATACTAGAGAGCTTACTTGTGGCATCTGTTTTGAAATGTATCCTCGTGCACGGGTTGAATCTGCTGCTTGTGGCCACCCTTACTGCTATTCATGCTGGGCAGGATATATTGGCACATCAATTAATGATGGTCCGGGATGTTTGGTGCTGAGATGTCCTGATCCCTCTTGTGGTGCTGCTGTTGGTCAAGATATGATTAACCTTTTAGCATCTGATGAAGATAAAGAGAAGTATGACCGTTACCTTCTCAGATCTTATATTGAAGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCACAGAGGAGGCTCACCGTCCAGTTGACTGTGGCACTGTTTCAAAGTGGATTTTGAAAAATAGTGCTGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAACCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAACCAAGGGTGCATGCATATGACATGTACTCCTCCTTGTAAATTTGAGTTTTGCTGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGATTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGATACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACAGAGGCCTGGTTACAGATAGTTGAATGCAGGAGGGTGCTGAAATGGACATATTCATATGGGTACTATTTACCGGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAACTACAGCTATTCCTGAATGCTGATGGCCCATCTAAAGAATTCAATGACTTTCGCACTAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTGGCTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAAAATGCTGCTGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGCGACTATTCGAACTATATCCAGCAGAATGACTGATGATAATCATTGGTCTTGTGAGCACTGTACCTATGCCAATGTTAAGTCTGCCACCACATGTCAAATGTGCAATCAACAGCGTCGATGA 1770 0.4429 MDSEDDMHDANDVESLDDDFYSGETEDAPMDYYSDYDDEADDYFDDADDSDRVESRRPEQNFTILRELDIRQRQEDDIARVAAVLSIPRVSASILLRHYNWSVSKVHDAWFADEDQVRKTVGLLEKPVFQNSNTRELTCGICFEMYPRARVESAACGHPYCYSCWAGYIGTSINDGPGCLVLRCPDPSCGAAVGQDMINLLASDEDKEKYDRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGSGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYSYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQLFLNADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKATSSKNAAGSSKGRGGRGKATIRTISSRMTDDNHWSCEHCTYANVKSATTCQMCNQQRR* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3531 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 537 - -
Gso11g3531 589 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Gso11g3531 589 MobiDBLite consensus disorder prediction 523 540 - -
Gso11g3531 589 MobiDBLite consensus disorder prediction 1 48 - -
Gso11g3531 589 MobiDBLite consensus disorder prediction 523 550 - -
Gso11g3531 589 ProSiteProfiles Zinc finger RanBP2 type profile. 561 589 IPR001876 -
Gso11g3531 589 SMART zf_4 563 587 IPR001876 -
Gso11g3531 589 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Gso11g3531 589 Pfam Ariadne domain 357 519 IPR045840 -
Gso11g3531 589 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Gso11g3531 589 SUPERFAMILY Ran binding protein zinc finger-like 561 588 IPR036443 -
Gso11g3531 589 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Gso11g3531 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 537 IPR031127 GO:0004842|GO:0016567
Gso11g3531 589 MobiDBLite consensus disorder prediction 1 58 - -
Gso11g3531 589 Gene3D - 559 589 - -
Gso11g3531 589 SUPERFAMILY RING/U-box 208 277 - -
Gso11g3531 589 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Gso11g3531 589 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 -
Gso11g3531 589 SMART ibrneu5 283 344 IPR002867 -
Gso11g3531 589 SMART ibrneu5 208 270 IPR002867 -
Gso11g3531 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 219 IPR013083 -
Gso11g3531 589 Gene3D - 266 521 - -
Gso11g3531 589 SUPERFAMILY RING/U-box 134 220 - -
Gso11g3531 589 SUPERFAMILY RING/U-box 289 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3531 Gso-Chr11 51131094 51138830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3531 17 588 ARIADNE family AT1G65430 70.326 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3531 K11968 - gmx:100810427 1184.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0276 15 2511087 2517827 Gso11g3531 11 51131094 51138830 GST
Gso11g3531 11 51131094 51138830 Gso11g1099 11 9813798 9821316 PCT
Gso11g1099 11 9813798 9821316 Gso11g3531 11 51131094 51138830 PCT