Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3516 ATGGAGTCAGATCTCGAGCAACAGCCGCAGGTGAATTCCTCGGGTTTAACTCGGTACCGATCGGCGCCGAGTTCTTATTTCTCGAACATCATTGACCGCGAGTTCTACGAGCACGTCTTCAACCGTCCCTCGAGTCCCGAAACGGAGCGAGTGTTCTCACGCTTCATGAACAGCTTAAACAGTGAAGAAGAAGATTCGCTCCATCAGCACAAGCTCTCAACTGATTCTTCTTCTTCTTCTGCGGCGGTTAAGGAAGAGGTTGTTAACCAACATGACCAGAGCGTCAACGAGGAACACGTGGTGGTGGCGGCGCTACAGCAGAGTAATAATAACATGAATAGTTATAACAACTCTGCTTCTCGTAATTTCTACCAAAGCTCCTCCTCCAAACCTCCCTTGCCGAACCCGAACCCGAACCTGTCCTCAGGTATGGAACAAGGATCGTTTTCAATGGGACTCAGGCATAGTGGAAATAACTCTAACCTTATCAGGCATAGCAGCTCACCCGCAGGACTATTTTCCCAAATTAACATTGAAAATGTGTATGCTGGTGTGAGAGGCATGGGGACTTTGGGGGCTGTTAATAACAGTATCGAAGATGCAAAATTTTCTAGTTCGAGAAGGTTGAAGAATCAACCGAACTATTCTTCGTCGGGGAGAATGTCGTCCATTGCTGAAATTGGGGACAAAGGGAATGGAGAAAGTAGTCCAGACAATGAAGCTTTTGCTGATGGTAACGATTTTATCACCGGTTTCCAAGTTGGTCATTGGGATGATGCTGCAATCATGTCTGACAACGTTGGTGGTCTCAAAAGATTTAGAGAAAACGATTCAAAACCATTTTCTGGCTTAAATGCGGCTGAGACTCAGAATGAAACAGGACAGACTCATGCTCCTTTGGCCCATCAGTTGAGTTTGCCAAATACTTCAGCTGAAATGGCTGCCATTGAGAAGTTTCTGCAGTTTTCAGATTCTGTTCCGTGCAAAATCCGTGCCAAACGGGGCTGTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGTATGAGGAAACTTCAAGATCTTGTCCCAAACATGGACAAGCAAACTAACACAGCTGATATGTTGGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGTTCAGCTGTAG 1179 0.458 MESDLEQQPQVNSSGLTRYRSAPSSYFSNIIDREFYEHVFNRPSSPETERVFSRFMNSLNSEEEDSLHQHKLSTDSSSSSAAVKEEVVNQHDQSVNEEHVVVAALQQSNNNMNSYNNSASRNFYQSSSSKPPLPNPNPNLSSGMEQGSFSMGLRHSGNNSNLIRHSSSPAGLFSQINIENVYAGVRGMGTLGAVNNSIEDAKFSSSRRLKNQPNYSSSGRMSSIAEIGDKGNGESSPDNEAFADGNDFITGFQVGHWDDAAIMSDNVGGLKRFRENDSKPFSGLNAAETQNETGQTHAPLAHQLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQL* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3516 392 MobiDBLite consensus disorder prediction 1 20 - -
Gso11g3516 392 MobiDBLite consensus disorder prediction 111 149 - -
Gso11g3516 392 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 386 IPR011598 GO:0046983
Gso11g3516 392 MobiDBLite consensus disorder prediction 202 223 - -
Gso11g3516 392 Gene3D - 337 392 IPR036638 GO:0046983
Gso11g3516 392 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 391 - -
Gso11g3516 392 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 391 - -
Gso11g3516 392 MobiDBLite consensus disorder prediction 111 130 - -
Gso11g3516 392 SMART finulus 342 392 IPR011598 GO:0046983
Gso11g3516 392 MobiDBLite consensus disorder prediction 62 95 - -
Gso11g3516 392 MobiDBLite consensus disorder prediction 202 244 - -
Gso11g3516 392 Pfam Helix-loop-helix DNA-binding domain 341 387 IPR011598 GO:0046983
Gso11g3516 392 MobiDBLite consensus disorder prediction 72 95 - -
Gso11g3516 392 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 391 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3516 Gso-Chr11 51006367 51009537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3516 7 391 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 40.458 1.04e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g3516 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3516 - - gmx:100805812 736.487