Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3513 ATGGCGGAGGAGCTGAAGCTGGACAACCTTAAAGCAGTGAAAGTGTTAGGCAAAGGAGGCATGGGCACCGTGTTCCTGGTCCAACTAGAAAACAACAACTCCCACGTGGCACTGAAAGTCGTAGACAAATCATCCTCCCACCACGACGCTCCTCGACGCGCCCGCTGGGAAATGAACGTCCTCTCTCGCTTATCCCATTCGCACCCCTTCCTCCCTTCCTTATTGGGCTCATTCCACTCCCAAAACTTAATGGGCTGGGCCGTCCCTTACTGCCCCGGCGGCGACCTCAACGCCCTCCGCTACCGCCAAACTGATCACGTCTTCTCCCCCGCCGTCATCCGCTTCTATGTCGCCGAGATCCTCTGCGCTCTCCAACACCTCCATTCCATGAACATCGCCTACCGCGACCTCAAACCCGAAAACGTCCTCATCCAGCAATCCGGACACGTCACCCTCACCGACTTCGACCTCTCCCGTACCCTCTCTCCCTCCGTTAATATTCCCTCCAACACCACTACTCCTCCTCCTTCCCGCAAACACCGCCGCTGGGTCCCACTCCCACTCCCACTCCACGCTAAAAACAAAAACCCCAAGCCCGCCCGAGTCAGCCCGGTCAACCGACGCAAACTCAGTTTCGTGCGATCCAACTCCTTCGTCGGCACCGAGGAGTACATCGCGCCGGAGGTCCTCCGCGCCGAGGGGCACGACTTCTCCGTCGACTGGTGGGCCCTCGGAGTTCTGACCTACGAGATGCTCTACGGAACGACGCCGTTCAAGGGGACGAATCGCAAGGAGACGTTTCGAAACGTGTTGTTCAAGCCGCCGGAGTTTGTGGGGAAGAAAACGGCGTTGACGGACCTCATCATGGGCTTGCTCGAAAAGGACCCCACCAAGCGTTTGGGTTACGTTCGAGGCGCTAGTGAGATCAAGGAGCATCAGTTCTTTAGAGGGGTTAAGTGGGACCTACTAACGGAGGTTCTGCGCCCGCCGTTTATTCCGTCGAGAGACGACGTCGACGCAACAACGACCAAGTCTTTCGCTGCGGGACTTGACATAAAGGGATACTTTCAGAGCTTAAAATCACCGCCGTCTCTGCCCCCTTCGCCGTTACGCTCACCGTCCTTTGAGTTTCAGAATAATGTTTCTTTACCGGAATTCTGA 1161 0.5676 MAEELKLDNLKAVKVLGKGGMGTVFLVQLENNNSHVALKVVDKSSSHHDAPRRARWEMNVLSRLSHSHPFLPSLLGSFHSQNLMGWAVPYCPGGDLNALRYRQTDHVFSPAVIRFYVAEILCALQHLHSMNIAYRDLKPENVLIQQSGHVTLTDFDLSRTLSPSVNIPSNTTTPPPSRKHRRWVPLPLPLHAKNKNPKPARVSPVNRRKLSFVRSNSFVGTEEYIAPEVLRAEGHDFSVDWWALGVLTYEMLYGTTPFKGTNRKETFRNVLFKPPEFVGKKTALTDLIMGLLEKDPTKRLGYVRGASEIKEHQFFRGVKWDLLTEVLRPPFIPSRDDVDATTTKSFAAGLDIKGYFQSLKSPPSLPPSPLRSPSFEFQNNVSLPEF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3513 386 MobiDBLite consensus disorder prediction 361 386 - -
Gso11g3513 386 PANTHER FLIPPASE KINASE 1-RELATED 5 363 - -
Gso11g3513 386 Gene3D Transferase(Phosphotransferase) domain 1 95 334 - -
Gso11g3513 386 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Gso11g3513 386 MobiDBLite consensus disorder prediction 371 386 - -
Gso11g3513 386 SUPERFAMILY Protein kinase-like (PK-like) 7 368 IPR011009 -
Gso11g3513 386 Pfam Protein kinase domain 215 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3513 386 Pfam Protein kinase domain 12 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3513 386 Gene3D Phosphorylase Kinase; domain 1 12 340 - -
Gso11g3513 386 ProSiteProfiles Protein kinase domain profile. 10 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3513 386 ProSiteProfiles AGC-kinase C-terminal domain profile. 316 386 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gso11g3513 386 SMART serkin_6 10 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3513 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Gso11g3513 386 MobiDBLite consensus disorder prediction 163 177 - -
Gso11g3513 386 MobiDBLite consensus disorder prediction 163 182 - -
Gso11g3513 386 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 5 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3513 Gso-Chr11 50975105 50976763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3513 3 386 AGC Kinase Gene Family AT3G20830 58.663 1.67e-150 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso11g3513 Pkinase 2.3e-34 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3513 11 50975105 50976763 Gso12g0466 12 4121204 4122712 PCT
Gso11g3513 11 50975105 50976763 Gso11g1121 11 10098027 10099475 PCT
Gso12g0466 12 4121204 4122712 Gso11g3513 11 50975105 50976763 PCT
Gso11g1121 11 10098027 10099475 Gso11g3513 11 50975105 50976763 PCT