Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3510 ATGGGAGCTGGTTGTTCTAAATTGTGTCTATGCTGGTGCCCCTCCAACTCCAAACCCAATCTTCATGACTTACCTGATAATGAGAATGAGAAGGAGGAGTCTTGGGTTGGCTTCACCGAGTTCACCTTGGATCAACTGAGAAGTGCCACATCGTCATTTTCACCCGACAACATAGTCTCGGAACACGGTGAGAAGGCTCCCAATGTTGTCTACAAAGGAAGGACTGAAGATGATAGGTTGGTTGCTGTGAAGCGCTTCAACAAGTCTGCTTGGCCTGATCCTCGACAGTTCCTAGAGGAAGCAAGGGCAGTGGGGCAGCTGAGGAATGAGCGGTTGGCTAACTTGGTTGGTTGTTGCTGTGAAGGGGAAGAGAGATTGCTTGTTGCTGAGTTTATGCCAAATGAAACTCTCTCCAAACATCTCTTTCACTGGGAGAGCCAGCCAATGAAATGGGCAATGAGGCTGAGAGTGGCCTTGTATTTAGCACAAGCATTGGAGTACTGCAGCAGTAAAGGAAGGGCATTGTATCATGATCTTAATGCTTATCGAGTTTTGTTTGATCAGGATGGAAACCCTAGGCTCTCTTGTTTTGGACTCATGAAAAACAGCAGAGATGGCAGAAGCTATAGTACAAATTTAGCTTTCACCCCACCTGAGTATTTGAGGACAGGAAGAATCACCCGAGAAAGTGTAATATACAGTTTTGGCACACTCTTGCTTGATCTTCTGAGTGGCAAGCATATTCCACCCAGTCATGCACTTGACCTAATACGTGGCAAAAACTTTCTGATGCTGGTGGACTCATGTTTGGAAGGTCATATTTCAAATGATGATGGAACTGAGATAGTGAGATTAGCTTCACGCTGTTTACAGTATGAACCTCGTGAGAGGCCAAACGCCAAGTCGCTTGTGACTGCTCTAGCTCCTCTTCAGAAAGAAACTTCAGTTCCATCACAAGTTTTGTTGGGCATACCAGATGAGATTACCCCATCAAAGGAAGCAGTTCCACTGACACCTTTTGGTGAAGCTTGTTCTAGAAGAGATCTCACTTCAATATATGAAATTTTGGAAACGGTGGGGTACAAGGATGATGAAGATGTAGCAAATGAGCTTTCGTTCCAAGTGTGGACAGACCAAATACAAGAAACACTAAATTCTAAGAAGCAAGGAGATTCTGCTTTCCATGCCAGAGACTTCTCTAAGGCCATTGAGTGCTATACACAATTCATCGATGGCGGAACGATGGTATCACCAACTGTGTATGCAAGGCGCTGCTTTTGTTACCTTATGATCAACATGGTACAAGAAGCACTGGGAGATGCCATGCAAGCTCAATCAGTATCCCCCACATGGCCAATTGCATTCTATCTTCAAGCAGTGGCCCTCTTCAGCCTCGGGATGGACCATGATGCAGAGGAAAGTCTTAAAGATGCAACAACTCTGGAAACCAGAAAACATAGAAACTGA 1467 0.4506 MGAGCSKLCLCWCPSNSKPNLHDLPDNENEKEESWVGFTEFTLDQLRSATSSFSPDNIVSEHGEKAPNVVYKGRTEDDRLVAVKRFNKSAWPDPRQFLEEARAVGQLRNERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWESQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRVLFDQDGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITRESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLVDSCLEGHISNDDGTEIVRLASRCLQYEPRERPNAKSLVTALAPLQKETSVPSQVLLGIPDEITPSKEAVPLTPFGEACSRRDLTSIYEILETVGYKDDEDVANELSFQVWTDQIQETLNSKKQGDSAFHARDFSKAIECYTQFIDGGTMVSPTVYARRCFCYLMINMVQEALGDAMQAQSVSPTWPIAFYLQAVALFSLGMDHDAEESLKDATTLETRKHRN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3510 488 Gene3D Tetratricopeptide repeat domain 381 488 IPR011990 GO:0005515
Gso11g3510 488 SUPERFAMILY Protein kinase-like (PK-like) 28 312 IPR011009 -
Gso11g3510 488 Gene3D Phosphorylase Kinase; domain 1 26 131 - -
Gso11g3510 488 Gene3D Transferase(Phosphotransferase) domain 1 133 324 - -
Gso11g3510 488 Pfam Protein tyrosine and serine/threonine kinase 70 307 IPR001245 GO:0004672|GO:0006468
Gso11g3510 488 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 488 IPR045845 GO:0004672|GO:0009742
Gso11g3510 488 SUPERFAMILY TPR-like 387 481 IPR011990 GO:0005515
Gso11g3510 488 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 1 488 - -
Gso11g3510 488 ProSiteProfiles Protein kinase domain profile. 56 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3510 Gso-Chr11 50956034 50960304 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3510 14 310 Glycoside Hydrolase AT3G07070 31.902 5.18e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gso11g3510 PK_Tyr_Ser-Thr 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3510 - - gmx:100804210 997.653