Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3509 ATGGACCATGACAAGACTGGATGCCAAGCTCCCCCAGAAGGTCCTATATTGTGCATCAACAACTGCGGATTTTTTGGAAGTGCAGCTACCTTGAGCATGTGTTCTAAGTGCCACAAAGACATGATGCTGAAGCAGGAGCAGGCAAAGCTTGTAGCATCATCCATTGGGAATATTATGAATGGGTCATCAAGCAGCAGTGGAAATGAACCTGTCGTTGCTACCAGTGTGGATGTTTCAGTCAATTCAGTAGAGTCTAAAATTATCTCTGCTCAACCTTTAGTTGCTTCAGGTTCAGACGAGAGTGATGAGGCGAAGCCCAAGGATGGTCCAAAACGATGCAGCAACTGCAATAAGCGGGTTGGTTTGACAGGATTTAATTGTCGATGCGGTAACCTTTTCTGTTCTGAACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTATCGCACTGCTGCAAGGGATGCCATAGCTAAAGCAAATCCAACTGTCAAGGCTGAGAAACTTGTTAAGATCTAG 519 0.4489 MDHDKTGCQAPPEGPILCINNCGFFGSAATLSMCSKCHKDMMLKQEQAKLVASSIGNIMNGSSSSSGNEPVVATSVDVSVNSVESKIISAQPLVASGSDESDEAKPKDGPKRCSNCNKRVGLTGFNCRCGNLFCSEHRYSDKHNCPFDYRTAARDAIAKANPTVKAEKLVKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3509 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Gso11g3509 172 Gene3D - 87 168 IPR035896 -
Gso11g3509 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
Gso11g3509 172 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 172 - -
Gso11g3509 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Gso11g3509 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Gso11g3509 172 SUPERFAMILY AN1-like Zinc finger 98 167 IPR035896 -
Gso11g3509 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Gso11g3509 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Gso11g3509 172 Gene3D - 4 70 - -
Gso11g3509 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Gso11g3509 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3509 Gso-Chr11 50952826 50955397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3509 8 172 C2H2 Transcription Factor Family AT3G52800 41.818 9.86e-35 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3509 - - gmx:100802969 335.109