Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3507 ATGACTCATCCCTACTGCTCTAATGACTTGAATGCTTGGTTTGACCTCAATTCTCCATGCCTTTTTTCCAATTCTTCATCACCTTGCTCCAATAACCCACCATTCTACTTTCCTACTACTAATATTAGTTACCGTCATAACTGCACAAATAATGGCATCTCTTTTACTCAGCATATTCAATCTTCTCCCAGCTCCTTTCCTCCTCCAAAAGAAGCACTTACTCTCCTTAACCTAAGCCCCGCAAGAGGTGAAGATCTTGATCTTGAATCTTCCTTCAGTGCCATGAAAGTCAACAAAGAGAAGGAGAAAGAATTACTAAGCATCATGTCTTCTAATAATAACTCTTTGGATGATGAAACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAAGCACTACAGCTACTTCATCAGCTGATTTAACTTCAAACATGTACTCAGAAAAAGAAGAAAAAGCCACTTTTGCTTCTGAGTATTCTCCGACTAGAATTAACAAGGGTCAGTATTGGATCCCTACCCCTGCTCAAATTCTGATCGGTCCAACACGGTTCTCATGCCCCCTTTGTTGCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACTCAACCAACAGCAATGCTTAGACTCCCTTGCTATTGCTGTGCACAAGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTTAGGACCCTCCAAACCCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGATTGGAGGACTCACGAGAAAAACTGTGGGAAGCTATGGTATTGCTCTTGTGGGTCCGATTTTAAGCACAAGAGATCTCTCAAAGATCATATCAAGGCATTTGGGAATGGACATAGAGCTTATGGAATCGACTCATGTCTTGATCAAGATGATGAACCGGGCTCAGAAATTGAGCAGGAAAATAATGAATCTTTAATTTCCAATCATAGTTGA 1053 0.4188 MTHPYCSNDLNAWFDLNSPCLFSNSSSPCSNNPPFYFPTTNISYRHNCTNNGISFTQHIQSSPSSFPPPKEALTLLNLSPARGEDLDLESSFSAMKVNKEKEKELLSIMSSNNNSLDDETVTVALHLGLPSTTATSSADLTSNMYSEKEEKATFASEYSPTRINKGQYWIPTPAQILIGPTRFSCPLCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAQGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHRAYGIDSCLDQDDEPGSEIEQENNESLISNHS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3507 350 Gene3D Classic Zinc Finger 226 316 - -
Gso11g3507 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Gso11g3507 350 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Gso11g3507 350 PANTHER ZINC FINGER PROTEIN WIP2 1 343 IPR043584 GO:0003700|GO:0010468
Gso11g3507 350 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 343 - -
Gso11g3507 350 MobiDBLite consensus disorder prediction 331 350 - -
Gso11g3507 350 SUPERFAMILY beta-beta-alpha zinc fingers 249 287 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3507 Gso-Chr11 50937897 50940323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3507 70 343 C2H2 Transcription Factor Family AT3G57670 61.415 4.09e-127 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g3507 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3507 - - gmx:100801922 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0297 15 2698493 2701059 Gso11g3507 11 50937897 50940323 GST
Gso11g3507 11 50937897 50940323 Gso12g0471 12 4199861 4202730 PCT
Gso11g3507 11 50937897 50940323 Gso11g1126 11 10163856 10166583 PCT
Gso12g0471 12 4199861 4202730 Gso11g3507 11 50937897 50940323 PCT
Gso11g1126 11 10163856 10166583 Gso11g3507 11 50937897 50940323 PCT