Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3502 ATGGCGAGCTACCAGCAGGCATCAACAATCGAGGAAGTGAGAACCCTATGGATTGGGGATTTACAATACTGGGTGGACGAAGGGTACCTGAGCCACTGCTTCGGCCACACGGGAGAAGTAATATCCATCAAAATCATCCGCAACAAGCTCACGGGCCAGCCCGAGGGCTACGGCTTCGTCGAGTTCGTATCCCACGCCGCAGCCGAGAGGGTTCTCCAGACCTACAACGGCACCCAAATGCCCGCCACTGACCAGACCTTCAGGCTCAACTGGGCCTCCTTCGGCATTGGTGAGCGCAGGCCCGATGCCGCCCCTGAACACTCCATCTTCGTCGGCGATCTCGCCCCCGACGTAACCGATTACCTTCTCCAGGAAACTTTTCGCGCTCACTACCCTTCCGTTCGCGGCGCCAAAGTTGTCACCGACCCCAACACCGCCCGCTCCAAGGGTTACGGCTTCGTTAAGTTTTCTGATGAGAATGAACGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCACCAGGCCCATGCGTATTAGTGCTGCTACGCCCAAGAAAACCACCGGTGCTTATGCTGCACCCGCCGCGCCTGTGCCCAAACCTGTGTATCCGGTTCCGGCCTATACTTCGCCTGTTGTTCAAGTTCAACCACCTGACTATGATGTCAATAATACTACCATTTTTGTTGGTAATTTGGATCTTAATGTGTCAGAGGAGGAGCTGAAGCAAAACTCTCTGCAATTTGGGGAAATTGTTTCTGTCAAAATTCAGCCTGGCAAGGGATTTGGTTTTGTTCAATTTGGGACCAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATGATAGGCCAACAAGTGGTACGGATTTCTTGGGGTAGGACTCTAACAGCTAGACAGATGGATCCAAATCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGAAGCCTATGCTTATGGGCCTGCTCATGATCCTTCATTGTATGCATATGGTGCATATCCTGGCTATGCACAATACCCCCAACAGGTTGAAGGTGCTCAAGACCTATCGGGTATGTCTGTGCCTACCATGGAACAAAGGGAGGAATTGTATGATCCATTGGCAATGCCCGATGTTGATAAATTAAATGCTGCATACCTCTCAGTACATGGAAGTGCCATTTTAGGACGGTCGCTTTGGCAAAAAACCTGTTCGTCATCCTTACAGCAAGCTTAA 1233 0.5101 MASYQQASTIEEVRTLWIGDLQYWVDEGYLSHCFGHTGEVISIKIIRNKLTGQPEGYGFVEFVSHAAAERVLQTYNGTQMPATDQTFRLNWASFGIGERRPDAAPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTARSKGYGFVKFSDENERNRAMTEMNGVYCSTRPMRISAATPKKTTGAYAAPAAPVPKPVYPVPAYTSPVVQVQPPDYDVNNTTIFVGNLDLNVSEEELKQNSLQFGEIVSVKIQPGKGFGFVQFGTRASAEEAIQKMQGKMIGQQVVRISWGRTLTARQMDPNQWSAYYGYGQGYEAYAYGPAHDPSLYAYGAYPGYAQYPQQVEGAQDLSGMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGSAILGRSLWQKTCSSSLQQA* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3502 410 SUPERFAMILY RNA-binding domain, RBD 13 188 IPR035979 GO:0003676
Gso11g3502 410 CDD RRM1_SECp43_like 15 95 - -
Gso11g3502 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 174 IPR000504 GO:0003723
Gso11g3502 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 292 IPR000504 GO:0003723
Gso11g3502 410 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 80 IPR000504 GO:0003723
Gso11g3502 410 Gene3D - 13 93 IPR012677 -
Gso11g3502 410 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 6 348 - -
Gso11g3502 410 Gene3D - 95 195 IPR012677 -
Gso11g3502 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 186 IPR000504 GO:0003723
Gso11g3502 410 Gene3D - 215 304 IPR012677 -
Gso11g3502 410 CDD RRM2_SECp43_like 106 185 - -
Gso11g3502 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 94 IPR000504 GO:0003723
Gso11g3502 410 SUPERFAMILY RNA-binding domain, RBD 208 321 IPR035979 GO:0003676
Gso11g3502 410 SMART rrm1_1 228 295 IPR000504 GO:0003723
Gso11g3502 410 SMART rrm1_1 15 90 IPR000504 GO:0003723
Gso11g3502 410 SMART rrm1_1 108 182 IPR000504 GO:0003723
Gso11g3502 410 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 6 348 - -
Gso11g3502 410 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 299 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3502 Gso-Chr11 50884915 50887763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3502 108 294 Eukaryotic Initiation Factors Gene Family AT4G34110 28.646 1.59e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3502 - - gmx:100799421 761.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0303 15 2752536 2754725 Gso11g3502 11 50884915 50887763 GST
Gso11g3502 11 50884915 50887763 Gso12g0474 12 4228383 4231828 PCT
Gso11g3502 11 50884915 50887763 Gso11g1131 11 10197931 10201564 PCT
Gso12g0474 12 4228383 4231828 Gso11g3502 11 50884915 50887763 PCT
Gso11g1131 11 10197931 10201564 Gso11g3502 11 50884915 50887763 PCT