Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3501 ATGGCTGCAACTCCTTCCAAATCCTTTCAAACTCCCTCCAACCCCAAACTCCGATCCAAATCCAATCCCAAATCCTCGCCGGCTGTAACCCCCGACACTCCACAAACCCTACATATTCGCAGATCCACGCGTGCCAAGTCCCTCCTCTTCGATGCTCCCAAGCCTCCCCACAGTCCGCTCCAAATCTCGCTCACAACTCCGAAGCGGAGGACGCGACGATCCATTGTTGAGGAGGATTCCGCCGAAGATAAAGCCACACCCAGCAAAATTTCACCTAAAAATAAAGCTCCGGTCGTCGATGCGTCGAAGAAGAAGAATGGGAAGAGCTCAATTGAATTTTTCTTTGCTCCGGTAACACCAGCTTCATCAGAAAAGGCATCCACTAGGAAGAGGGAGGGTGAGGGGGGTGTTGTTTCCAGAGCTAAAAGGGGGAAATCGGAAAATCGTGAAAAGAGTGCAAAATTGCCTCAGAGGCGCGTGTATTACAAAAAAGTGATTTACGATGGAGGCGAGTTTGAATTGGGGGATGATGTTTATGTGAAGAGGAGAGAAGATGCTAGCTCCGATGATGAAGATCCCGAAATGGAGGAGTGTAGGATGTGTTTTTCCTCAAACGATGAGGTCATGATTGAGTGTGACGATTGTTTGGGTGGGTTTCATTTGAAATGCTTGAGGCCTCCATTGAAGGATGTTCCCGAAGGGGATTGGATCTGTGGGTTCTGTGAGGCTCGTAAGATGGGTAAGGAAGTTCAGTTACCAAAGCCTCCGAAGGGTAAGAAACTAGTTAGAACTATGAGGGAGAAGCTCCTTTCCAGTGATTTGTGGTCTGGTCGTGTTGAAAGCATATGGAGAGAGGTAGATGGCAACTATTGGTGTCGGGTGCGCTGGTATACAATCCCGGAAGAGACTTCTGTTGGGCGGCAACCTCATAACCTGAGGAGGGAGCTATATCGAACTAATGATTTTGCTGACATCGAGATGGAATCTGTCCTTAGACATTGCCATGTCATGACCCCCAAAGAATATGCTAAAGCTAGCAATGAGGGAGATGATGTTTTCTTATGTGAGTATGAGTATGACATCCATTGGCACAGCTTCAAACGTCTTGCTGACATTGACAATGAAACAGAGAATGGTGAAGAGTCTGACAGTGATGAAGACTGGAATGTTGGCAAGGAATCAGACTCCGATACAGATGAAGATGTTGAATATGAAGAAGAAAATATTAAAAATGCACAATCTCAGCCATCAAGAAGCCATCACTTAGCTGCAAATCTGTACAAGGGACGGTTCTTTGGACTTCAAAAGATAGGCACAAAAACGATTCCACAGCATGTAAGATCTCACAAACAGACTGATCTTGAGAGAGCAAAGGCTACACTGTTGTTGGCGTCACTGCCAAAATCTTTACCTTGTAGAAATAAAGAAATGGAGGAGATAACTACATTCATCAAAGGTGCTATTTCTAATGATCAATGTCTGGGGCGTTGCCTCTACATTCATGGTGTTCCGGGAACTGGCAAGACAATGAGTGTACTGTCAGTAATGAGAAGTTTGAAGTCAGAAGTTGATGCAGGAAACATCAAACCATACTCTTTTGTGGAGATTAATGGTCTGAAATTGGCATCACCAGAGAATATTTATAAGGTTATTTATGAGGCACTAAATGGCCACAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTAAATGAGAGATTTGTAGAAGGAAAGAAAACCAGAGATGAGGCTGACCAGCCATGTATTTTGCTTATTGATGAACTTGATCTTCTAGTAACCAGAAACCAGTCGGTTCTGTACAATATTCTTGACTGGCCTACTAAGCCACATTCCAAGCTAATTGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATATCAAGCCGAATGGGCATACAGAGGCTTTGCTTTGGCCCATATAATTATCAGCAGCTTCAAGAAATCATTTCAAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCTGTAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCTGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCAGCCGAAATAGCAGATTATCGTGTTAAGAAGCTAATTTCTAATCCTGATTGTGTTACTGCAGGAAAGGGACTTGTTGGAATGGTAGATGTTGAGGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAATGATGAAAAGCTGTTCCAGAGTTGGCAAAATTTTCCTGACCGCTATGGTGCACGAGCTTTATAATTCAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAATGAGGGTTTCATGCTTCTGTACCAGCAACGGAGAAGTGTTTCCTGGGTATGATACTCTCCTGCAAATTGGCTGTAGGCTTGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCCAAGCACAAGTTGCAAAAATTGCAGCTTAATTTCCCGAGTGATGATGTCGCCTTTGCGCTGAGAGATTGCAAAGATCTACCTTGGTTGTCAAAGTATCTAATGTAG 2556 0.4409 MAATPSKSFQTPSNPKLRSKSNPKSSPAVTPDTPQTLHIRRSTRAKSLLFDAPKPPHSPLQISLTTPKRRTRRSIVEEDSAEDKATPSKISPKNKAPVVDASKKKNGKSSIEFFFAPVTPASSEKASTRKREGEGGVVSRAKRGKSENREKSAKLPQRRVYYKKVIYDGGEFELGDDVYVKRREDASSDDEDPEMEECRMCFSSNDEVMIECDDCLGGFHLKCLRPPLKDVPEGDWICGFCEARKMGKEVQLPKPPKGKKLVRTMREKLLSSDLWSGRVESIWREVDGNYWCRVRWYTIPEETSVGRQPHNLRRELYRTNDFADIEMESVLRHCHVMTPKEYAKASNEGDDVFLCEYEYDIHWHSFKRLADIDNETENGEESDSDEDWNVGKESDSDTDEDVEYEEENIKNAQSQPSRSHHLAANLYKGRFFGLQKIGTKTIPQHVRSHKQTDLERAKATLLLASLPKSLPCRNKEMEEITTFIKGAISNDQCLGRCLYIHGVPGTGKTMSVLSVMRSLKSEVDAGNIKPYSFVEINGLKLASPENIYKVIYEALNGHRVSWKKALHLLNERFVEGKKTRDEADQPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYQQLQEIISSRLKGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRVKKLISNPDCVTAGKGLVGMVDVEAAIQEMFQAPHIQMMKSCSRVGKIFLTAMVHELYNSGMGETTFEKLAMRVSCFCTSNGEVFPGYDTLLQIGCRLGECRIILCEAGAKHKLQKLQLNFPSDDVAFALRDCKDLPWLSKYLM* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3501 851 Pfam PHD-finger 198 243 IPR019787 -
Gso11g3501 851 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 132 846 - -
Gso11g3501 851 MobiDBLite consensus disorder prediction 1 42 - -
Gso11g3501 851 MobiDBLite consensus disorder prediction 125 154 - -
Gso11g3501 851 Pfam ATPase family associated with various cellular activities (AAA) 499 644 IPR003959 GO:0005524|GO:0016887
Gso11g3501 851 Pfam BAH domain 278 367 IPR001025 GO:0003682
Gso11g3501 851 MobiDBLite consensus disorder prediction 375 419 - -
Gso11g3501 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 716 IPR027417 -
Gso11g3501 851 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 132 846 IPR020793 -
Gso11g3501 851 CDD AAA 475 651 - -
Gso11g3501 851 MobiDBLite consensus disorder prediction 1 154 - -
Gso11g3501 851 ProSitePatterns Zinc finger PHD-type signature. 198 241 IPR019786 -
Gso11g3501 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 260 IPR013083 -
Gso11g3501 851 SMART AAA_5 494 648 IPR003593 -
Gso11g3501 851 ProSiteProfiles BAH domain profile. 254 370 IPR001025 GO:0003682
Gso11g3501 851 Gene3D - 450 645 IPR027417 -
Gso11g3501 851 SMART PHD_3 197 242 IPR001965 -
Gso11g3501 851 MobiDBLite consensus disorder prediction 376 406 - -
Gso11g3501 851 Pfam AAA lid domain 672 705 IPR041083 -
Gso11g3501 851 Gene3D - 646 736 - -
Gso11g3501 851 Gene3D - 107 192 IPR043151 -
Gso11g3501 851 Gene3D - 261 395 IPR043151 -
Gso11g3501 851 SMART BAH_4 229 370 IPR001025 GO:0003682
Gso11g3501 851 ProSiteProfiles Zinc finger PHD-type profile. 195 244 IPR019787 -
Gso11g3501 851 SUPERFAMILY FYVE/PHD zinc finger 185 248 IPR011011 -
Gso11g3501 851 MobiDBLite consensus disorder prediction 70 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3501 Gso-Chr11 50875149 50882499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3501 3 850 Core DNA Replication Machinery Family AT4G14700 61.264 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso11g3501 AAA 1.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3501 K02603 - gmx:100798547 1728.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0304 15 2755576 2762642 Gso11g3501 11 50875149 50882499 GST