Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3499 ATGAGGAAGCCAGAAGCGTGTAATAATAATACTAAAAACAATAGCAACAAGAAGCTTAGAAAGGGGTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACCATGGACAAGGGTGTTGGAGCGATGTGGCAAGAAATGCTGGCCTCCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTCCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGTTTGCCTGGGCGAACCGACAATGAAATAAAAAACTTTTGGAATTCAACGATAAAGAAAAGACTCAAGAACATGTCGTCCACGACGACCACAACCTCAACCTCACCAAATGCAAGCGAGACCTCAATATCCGAGCCTAGTAATAAGGACCTCAACAACATGGGAGGGTTTATTTCCACACTACATAATAAACATGCAGGTTTTGTTCCTATGTTCGGTTCATCTCCATCACCATCAATGATGCAAACCAGTACAGTTTTCAATAACATGATTGAAAGGTTTCCTATGCTGGAGCAAGGACTGATTAACATGCCAGCTTCTGGAGGGTACTTCGAAGGCACAGGTAGTACTCCTTGCTTTTCGCAATGTGAAGTTGACAACAATAAAGGTTCTTGTTATTTAGAAAACGAAGTGTTTGAGAGTGTAAATATCGGGGTAGAAGGGGATATGTTTGTTCCTCCCCTTGAGAATGTTACATGCAAGAGAGAAGAAACAACTAACAGCAGTTACTTTGACGCTGACATAAATAGTATCCTTAATAACTGCAACAATATTGGCATAGCTGAAAATAAGGCTCATCATGGGGTGGAGAATTTGTTTCAGCAAGAGTTAGCCACTGCCACAGGAGAATGGGACTTTGAAGAGTTGATGAAAGATGTTTCCTCCTTTCCATTTCTTGATTTTTCATACTGA 996 0.4197 MRKPEACNNNTKNNSNKKLRKGLWSPEEDDKLMNYMLNHGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSTTTTTSTSPNASETSISEPSNKDLNNMGGFISTLHNKHAGFVPMFGSSPSPSMMQTSTVFNNMIERFPMLEQGLINMPASGGYFEGTGSTPCFSQCEVDNNKGSCYLENEVFESVNIGVEGDMFVPPLENVTCKREETTNSSYFDADINSILNNCNNIGIAENKAHHGVENLFQQELATATGEWDFEELMKDVSSFPFLDFSY* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3499 331 CDD SANT 76 116 IPR001005 -
Gso11g3499 331 SUPERFAMILY Homeodomain-like 19 115 IPR009057 -
Gso11g3499 331 PANTHER MYB DOMAIN PROTEIN 55 1 331 - -
Gso11g3499 331 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Gso11g3499 331 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Gso11g3499 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 68 IPR017930 -
Gso11g3499 331 SMART sant 73 121 IPR001005 -
Gso11g3499 331 SMART sant 20 70 IPR001005 -
Gso11g3499 331 Gene3D - 75 149 - -
Gso11g3499 331 CDD SANT 24 68 IPR001005 -
Gso11g3499 331 MobiDBLite consensus disorder prediction 125 150 - -
Gso11g3499 331 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Gso11g3499 331 MobiDBLite consensus disorder prediction 1 21 - -
Gso11g3499 331 ProSiteProfiles Myb-like domain profile. 16 68 IPR001005 -
Gso11g3499 331 Gene3D - 18 74 - -
Gso11g3499 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Gso11g3499 331 PANTHER MYB TRANSCRIPTION FACTOR 1 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3499 Gso-Chr11 50856650 50859489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3499 1 329 MYB Transcription Factor Family AT3G08500 44.699 5.27e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g3499 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3499 K09422 - gmx:100799410 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0306 15 2779033 2782043 Gso11g3499 11 50856650 50859489 GST
Gso11g3499 11 50856650 50859489 Gso12g0478 12 4264209 4267082 PCT
Gso11g3499 11 50856650 50859489 Gso11g1136 11 10235755 10238401 PCT
Gso12g0478 12 4264209 4267082 Gso11g3499 11 50856650 50859489 PCT
Gso11g1136 11 10235755 10238401 Gso11g3499 11 50856650 50859489 PCT