Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3488 ATGAGGGAACAAAGTTTTGGAGATAAGATGCATGGAATAACAACTCTCGCTCTCACTGCAACTGCAAACACAAACACATTCCTTTCTTGTCCTCTAAGATCTCTTCTACCACTTACCCCTCCACCGAATTGTTGCATACCCACTTGTAAATTTAACTATGGAATTCGTTTCAACCATTCTCAGTGGAAGCACCAAAAAACAGAAAGATGGAGCAACAGAAATAGAACGATGGTTGTGAGAGCAAGGCGTAGCGAGTCTCCGTATGAAGTTTTGGGCGTGTCTCCATCCGCAACCGTCGACCAAATAAAAAAGGCCTATCGGAAACTTGCTCTCAAGTATCATCCCGATGTCAATAAAGAGGATAAGGCACAGGAGAAGTTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCTAGATCCCGCAAAAAATATGATTCTGGAAGTCGAGGTTATGATTTTTCTCAAGGAAGCCGAACTAGGAATGTACAAGCTGAAGAAGAGTTTTATGGACTAGAGGACTTCTTTAAGGATCTTCAACAAGAATTCAGGAACTGGGAAGCAAACACTGCTTCACAAGGAAAGCCAAAGAGTCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTCAATATTACTGATCAAAATGATGATTATAAAACGCCTCAGGGAGGCAACACATCGAACTTTCCTGGGACAGAGACACCAAGCAATAGCAGTCAAGGTCAAGCTGGCAAGGGAAGCAGAGGCGTTGAGGATAACCTTGAGGAAATAGAAGCCACTCTGGCTCAGTTGAAAAAGGAACTAGGCTTATAG 843 0.4211 MREQSFGDKMHGITTLALTATANTNTFLSCPLRSLLPLTPPPNCCIPTCKFNYGIRFNHSQWKHQKTERWSNRNRTMVVRARRSESPYEVLGVSPSATVDQIKKAYRKLALKYHPDVNKEDKAQEKFMRIKHAYNTLLNSRSRKKYDSGSRGYDFSQGSRTRNVQAEEEFYGLEDFFKDLQQEFRNWEANTASQGKPKSLWEELAEIGEEFVEFLEKELNITDQNDDYKTPQGGNTSNFPGTETPSNSSQGQAGKGSRGVEDNLEEIEATLAQLKKELGL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3488 280 MobiDBLite consensus disorder prediction 225 256 - -
Gso11g3488 280 CDD DnaJ 87 139 IPR001623 -
Gso11g3488 280 ProSiteProfiles dnaJ domain profile. 86 150 IPR001623 -
Gso11g3488 280 MobiDBLite consensus disorder prediction 222 263 - -
Gso11g3488 280 SMART dnaj_3 85 142 IPR001623 -
Gso11g3488 280 Gene3D DnaJ domain 83 193 IPR036869 -
Gso11g3488 280 Coils Coil 257 280 - -
Gso11g3488 280 SUPERFAMILY Chaperone J-domain 37 146 IPR036869 -
Gso11g3488 280 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 58 278 - -
Gso11g3488 280 ProSitePatterns Nt-dnaJ domain signature. 127 146 IPR018253 -
Gso11g3488 280 PRINTS DnaJ domain signature 88 106 IPR001623 -
Gso11g3488 280 PRINTS DnaJ domain signature 106 121 IPR001623 -
Gso11g3488 280 PRINTS DnaJ domain signature 122 142 IPR001623 -
Gso11g3488 280 Pfam DnaJ domain 87 147 IPR001623 -
Gso11g3488 280 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 58 278 - -
Gso11g3488 280 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3488 Gso-Chr11 50774332 50777909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3488 88 148 C2H2 Transcription Factor Family AT1G74250 40.299 7.01e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3488 - - gmx:100793601 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0317 15 2861281 2865167 Gso11g3488 11 50774332 50777909 GST