Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3486 ATGAATTCGGACACGACTTCCTATTGGTGCTACAGCTGCACGCGCTTCGTTCACATACAAGAACAGAACGACGTCGTTTGCCCGCGCTGCCACGGCGGCTTCGTCGAAAAGGTCACCGCCCCCCAATCGTCAAGGCAAGGCTTCCGCCGCCGACGCCGCAACGCCGGGAACCACTCGGCGTTCAACCCGGTGATCGTGCTCCGCGGACCGGGAGAGGACGAGGAGAGCAGCTTTGAGTTATACTACGACGGCTTCGACGGCGAGGGGCTCCGCCCGCTGCCATCCACCATGTCGGAGTTCTTGCTTGGATCGGGATTCGACCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGCCTCGGGAGGGCTGAGAATCCACCGGCGTCTAAGGCGGCTATAGAGTCAATGCCGACGGTGGAAATCACCGAGTCTCACGTCGCGTCGGAGACGATCTGCGCCGTGTGCAAGGAAGCCTTCGAGCTTGGCGCGTTGGCGCGTGAGATGCCGTGCAAGCATCTCTACCACTCCGATTGCATTCTCCCGTGGCTTTCGATGCGAAACTCGTGTCCGGTGTGCCGCCACGAGTTGCCGTCGGAGCAAACCGCGCCGGAAACAAGAGTCGCCGGCCAGATCGAGGAGGAGGCTGTAGGGTTGACCATATGGAGGTTGCCGGGTGGGGGATTCGCCGTCGGGAGGTTCGCCGGAGAGAGCCACTTGCCGGTGGTTTACACGGAGATGGAGAGTGACGGGAACTCCAACGAAGGTTCTAGAAGAATCTCTCTGGCGGTTGGAAGCGGCAGAGTTAGGGAAAGTCGTGGTGGTGGATTTGGGAGAATTTTCCGCAATTTGTTTGGGAGAATTGGGGCTTTGACTAGAAGCCGTAGCCTTTCAACTTCACTCTTCAATAGAAGAAGTTCTAGAACCTGGGTTTTGGGAAATTGA 945 0.5841 MNSDTTSYWCYSCTRFVHIQEQNDVVCPRCHGGFVEKVTAPQSSRQGFRRRRRNAGNHSAFNPVIVLRGPGEDEESSFELYYDGFDGEGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGLGRAENPPASKAAIESMPTVEITESHVASETICAVCKEAFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQTAPETRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMESDGNSNEGSRRISLAVGSGRVRESRGGGFGRIFRNLFGRIGALTRSRSLSTSLFNRRSSRTWVLGN* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3486 314 CDD RING-H2_RNF126_like 153 194 - -
Gso11g3486 314 Pfam Ring finger domain 152 194 IPR001841 -
Gso11g3486 314 ProSiteProfiles Zinc finger RING-type profile. 153 194 IPR001841 -
Gso11g3486 314 Pfam Protein of unknown function (DUF1117) 217 301 IPR010543 -
Gso11g3486 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 200 IPR013083 -
Gso11g3486 314 SMART ring_2 153 193 IPR001841 -
Gso11g3486 314 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Gso11g3486 314 PANTHER OS05G0110000 PROTEIN 4 273 - -
Gso11g3486 314 SUPERFAMILY RING/U-box 133 199 - -
Gso11g3486 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3486 Gso-Chr11 50766906 50768339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3486 82 205 C3H Transcription Factor Family AT5G01980 41.129 2.45e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3486 - K11982 gmx:100792020 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0321 15 2886563 2888141 Gso11g3486 11 50766906 50768339 GST
Gso11g3486 11 50766906 50768339 Gso12g0501 12 4455408 4456932 PCT
Gso11g3486 11 50766906 50768339 Gso11g1165 11 10455234 10456717 PCT
Gso12g0501 12 4455408 4456932 Gso11g3486 11 50766906 50768339 PCT
Gso11g1165 11 10455234 10456717 Gso11g3486 11 50766906 50768339 PCT