Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3476 ATGGGTGTGTTCAGTACAGTGCTGCTGTGCCTTATGTCCCTAATGTGGATGGTGGATGCTCGAATTCCAGGCGTATACTCTGGCGGCGCTTGGCAAAATGCTCACGCTACGTTCTACGGAGGATCCGATGCTTCCGGCACCATGGGTGGAGCATGTGGGTACGGGAACCTGTACAGCCAAGGGTACGGAGTGAACACTGCAGCGTTGAGCACGGCGCTCTTCAACAGCGGGCTGAGCTGCGGAGCGTGCTTCGAGATCAAATGCGCAAACGACAAGCAGTGGTGTCACTCCGGCAGCCCTTCCATCTTCATCACCGCCACCAACTTCTGTCCCCCTAACTACGCTCTTCCAAACGACAATGGCGGCTGGTGCAACCCTCCTCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGCATCGTGCCTGTCGCCTTCCGCAGGGTGGCATGTAGGAAGCATGGTGGGATCAGGTTCACAATAAACGGTTTCCGTTACTTTAACCTGGTTTTGATCAGCAACGTAGCGGGTGCAGGGGATATCGTGCACGCCTACGTTAAGGGATCACGAACGGGGTGGATGCCAATGAGCAGAAACTGGGGACAGAACTGGCAGTCAAACGCCGTTTTGGTGGGTCAGGCTTTGTCCTTCAGAGTCACCGCCAGTGACCGTCGCTCTTCCACCTCTTGGAACATTGTTCCATCAAATTGGCAATTTGGTCAAACTTTCACTGGAAAGAACTTCCGTGTCTGA 774 0.5504 MGVFSTVLLCLMSLMWMVDARIPGVYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVACRKHGGIRFTINGFRYFNLVLISNVAGAGDIVHAYVKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTASDRRSSTSWNIVPSNWQFGQTFTGKNFRV* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3476 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Gso11g3476 257 Gene3D - 163 255 IPR036749 -
Gso11g3476 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Gso11g3476 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Gso11g3476 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Gso11g3476 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Gso11g3476 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Gso11g3476 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Gso11g3476 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Gso11g3476 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Gso11g3476 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Gso11g3476 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Gso11g3476 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Gso11g3476 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Gso11g3476 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Gso11g3476 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Gso11g3476 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Gso11g3476 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Gso11g3476 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Gso11g3476 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Gso11g3476 257 Pfam Lytic transglycolase 66 152 IPR009009 -
Gso11g3476 257 PANTHER EXPANSIN-A15 7 256 IPR002963 GO:0009664
Gso11g3476 257 PANTHER EXPANSIN 7 256 - -
Gso11g3476 257 SMART dpbb_1 66 153 IPR007112 -
Gso11g3476 257 Gene3D - 19 159 IPR036908 -
Gso11g3476 257 SUPERFAMILY Barwin-like endoglucanases 9 181 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3476 Gso-Chr11 50660365 50661691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3476 1 257 Expansin Gene Family AT2G39700 83.658 5.64e-164 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3476 - - gmx:100789913 549.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0333 15 2996939 2998468 Gso11g3476 11 50660365 50661691 GST
Gso11g3476 11 50660365 50661691 Gso12g0518 12 4628895 4631453 PCT
Gso11g3476 11 50660365 50661691 Gso11g1179 11 10605687 10608145 PCT
Gso12g0518 12 4628895 4631453 Gso11g3476 11 50660365 50661691 PCT
Gso11g1179 11 10605687 10608145 Gso11g3476 11 50660365 50661691 PCT