Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3473 ATGGGAGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCATTTAACACTGTGTTCAATTCAAAGTATGTGAGTACAGATGGAAATGATCTCGGTAGCACAAACGATAAGGTTTCAGCAAACTCAGTTCCTCAGACTCCTCGGAGTGAGGGTGAGATCTTGCAGTCATCCAATTTAAAGAGCTTTACCTTGTCAGAACTTAAGACGGCCACTAGAAATTTCCGTCCAGATAGCGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGGTGGATTGATGAGAATTCATTGACCGCTACCAAACCTGGCACTGGCATTGTTATTGCTGTTAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTTTTGCCTTGAAGATGAACACCGCCTTCTCGTCTACGAATTTATGCCACGTGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGCTCATATTTTCAACCACTTTCTTGGAGCCTACGTTTGAAGGTTGCTCTTGATGCTGCCAAAGGGCTTGCATTTCTGCACAGTGCTGAAGCAAAAGTGATATATAGAGATTTTAAGACTTCAAATGTCTTGCTGGATTCAAAATATAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGACGGACCAACAGGAGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACATATGGATACGCAGCACCTGAATATCTAGCCACAGGTCATCTTACTGCCAAGAGCGATGTGTACAGTTTTGGAGTTGTCCTGCTGGAAATGTTGTCTGGGAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAACACAATTTGGTGGAATGGGCTAAACCTTTCATGGCAAACAAGCGTAAGATATTCCGCGTGTTGGACACCCGGCTCCAAGGACAATATTCAACAGATGATGCCTACAAGCTAGCCACCCTTGCCTTGCGCTGCCTATCAATAGAATCCAAGTTCAGGCCAAACATGGACCAAGTGGTTACGACATTGGAGCAGTTGCAGCTTTCTAATGTAAATGGAGGGCCTCGTGTTCGTAGAAGAAGTGCTGATGTTAATAGAGGCCATCAAAATCCTTCTTCTGTTAATGGATCTCGAGTTCGTAGAAGAAGTGCCGATGATATTAGCCGTTTGGAGACTCCCAACGCTTATCCCCGACCCTCTGCATCCCCTCTTTATACTTGA 1260 0.446 MGVCLSAQIKAESPFNTVFNSKYVSTDGNDLGSTNDKVSANSVPQTPRSEGEILQSSNLKSFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHSAEAKVIYRDFKTSNVLLDSKYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPFMANKRKIFRVLDTRLQGQYSTDDAYKLATLALRCLSIESKFRPNMDQVVTTLEQLQLSNVNGGPRVRRRSADVNRGHQNPSSVNGSRVRRRSADDISRLETPNAYPRPSASPLYT* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3473 419 MobiDBLite consensus disorder prediction 364 419 - -
Gso11g3473 419 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Gso11g3473 419 PANTHER OS01G0588500 PROTEIN-RELATED 26 378 - -
Gso11g3473 419 Gene3D Transferase(Phosphotransferase) domain 1 160 371 - -
Gso11g3473 419 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3473 419 CDD STKc_IRAK 80 359 - -
Gso11g3473 419 SUPERFAMILY Protein kinase-like (PK-like) 48 356 IPR011009 -
Gso11g3473 419 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Gso11g3473 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Gso11g3473 419 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Gso11g3473 419 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 26 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3473 Gso-Chr11 50638615 50641692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3473 20 356 Glycoside Hydrolase AT3G07070 46.450 1.05e-103 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso11g3473 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3473 - - gmx:100788856 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0336 15 3018723 3021733 Gso11g3473 11 50638615 50641692 GST
Gso11g3473 11 50638615 50641692 Gso12g0520 12 4644824 4648457 PCT
Gso11g3473 11 50638615 50641692 Gso11g1181 11 10622478 10626055 PCT
Gso12g0520 12 4644824 4648457 Gso11g3473 11 50638615 50641692 PCT
Gso11g1181 11 10622478 10626055 Gso11g3473 11 50638615 50641692 PCT