Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3467 ATGGAGCTTTTGAAGCCTTTGCACCCTCACCATGCACCCATTTTGCGAATTCCCTTTCACGCTGTCCCCTCTTCATCTTCTTCTCAATCTCAGTCTCAGGTTCCCCTCCCTATGATTTATAAGGTTCATGTCGCTGTTGGGAAATCGCTCGACAAAGCTGTTCCTCTGCTTCGATGGACTTTAAACCACTTTCGGAACGCGGAAATCGTCATTGTTCATGCTTATCAACCTTCTCTCACCATCCCCACTCTATTGGGGAAATTGCCAGCATCACAGGCTAGTCCTGCAGTGGTGTCTGCTTTTCGAAAAGTCGAAAGAGAACAAATCATGAAGCTCTTAGACAAGTATTTGAGCATTTGCCGCGCAGCTAGGGTTAAGGCAGCCATTATTGTAACCGAAGCTGACCAAGTCCAGAAAGGAATTGTTGATTTGGTTATTAAGCATAATATTGAGAAGCTTGTCATTGGAGCAGTACCAGAAAATTGCATGAAAGTGAAAAGGAATTCCAGTAAAGCAAATTACACTGCCAAAAATGCTCCTCCTTTCTGTGAAGTATGGTTTATCTATAAAGGTAAACACATTTGGACAAGAGAGGCTTCTGAAACACCATGTTCTTCATCCTCATGTACTCAACCCGAGATTGCCATCACAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAATTATTTGACTCAGAATATCTTTGGCCAAATTCAGCAAGAACTACTGCTGTTTCTGGAATTAGAAGTTGGGTTCAGGGGGAAATCATTGAAACCGAAGCCACTTTTTCATCCAAAGCATCCAGTTGCTGCAGTCATTGTTCCCCCCAAAATTCTTCTCGGGCTTATTTTGATACATATTTAGAGGTCATGGAAGAAAGAATTAACAAACAACTTATTGAAACCAAGAGAGAAGCTGAGGCAGTAACAGACGAAGCCTTCACAGAGCTATTAAAGTGTGAGAAGTTAGAAGTTGAAGCCATGGAGGCTATTAGGAAGGTCAATTTGTTTGAATCTGCCCATGTGCGTGAAGTAAAGCTCAGAAAAGAGGCTGAGGATGCACTGAGAGATACAGTACAAGAACAACAAAAGCTCTTGAATGAGAGTGAAGAAATTGCTGGCGAGCTACAAATGACCATGAGAAATATTGCCCTGCTAGATAGTCGTGCTCATGAAGCAAACCGTAGGCGCGATGAAGCTGCAGATGAACTATCACTAATTCAAGAATCCATCTCAACCCTGTGGCAAGAAGGGCAGCAGATTAGGAGACAGAAAACGGAAGCCCTACGTTGGCTTGAGCGGTGGAGGAGTCGTGGACAAGTTGGAGCAGCTCATTGCAATGGGGTCATTGGGTTTGCCGAAGAATTACCTGAGTTAGCAGAATTTTCATTATCAGATCTTCAAAATGCCACATGTAATTTTTCCAATAGCTTTAAAATTGAGCAAGGTGGATATGGTTGCATATACAAGGGGGAAATGTTGGGTAGGACTGTTGCTATAAAAAAGTTCCATCAACATAACATGCAAGGACCATTGGAGTTTCGTCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTAATCACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGAAAAAGCAACAATTCCCCTTTGACATGGAATACCCGAGCACGAATGATTGCTGAAATCGCTAGTGCTCTCTGCTTCCTACATTCTTTTAAGCCTGAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCTTCACTGGGTTGCAAGATGTGTGGATTTGGGCTCTGCAGGCTGGTGAGCGAGGAGTCTCTCCTCCGTCCTAGTTTCCGCTTGAGCACTGAACCAAAAGGTGCTTTCACATATACAGATCCAGAGTTTCAGAGAACTGGAATACTAACCACCAAGTCTGACATCTACTCCTTCGGGCTCATCATTTTACAACTTCTCACTGGTAGGACTCCAGTTGGATTAGCAGTTTTAGTACGCAATGCAGTTTCATGTGGAAAGTTGTCTTCAATTCTTGATTCTTCAGCTGGAGAATGGCCCTCAGCTGTGGCAATGCAATTGGTTGAACTGGGACTGCAATGCTGTCAACAATACCATAGAGACAGACCAGAGTTAACACCTACACTTGTGAGAGAATTGGAGCAGTTGCATGCTTCAGAAGAGCGACCTGTACCATCTTTTTTCTCATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCGGCAGATGGATTTACCTATGAAGGAGATGCCATACGTGAATGGTTGGAAAATGGACATGATACTTCTCCCATGACTAATTTGAAATTAAGTCACCTGTTTCTTACTCCCAATTACGCACTTCGACTTGCCATCCAAGACTGGCTTTGCAAATCTTGA 2466 0.4303 MELLKPLHPHHAPILRIPFHAVPSSSSSQSQSQVPLPMIYKVHVAVGKSLDKAVPLLRWTLNHFRNAEIVIVHAYQPSLTIPTLLGKLPASQASPAVVSAFRKVEREQIMKLLDKYLSICRAARVKAAIIVTEADQVQKGIVDLVIKHNIEKLVIGAVPENCMKVKRNSSKANYTAKNAPPFCEVWFIYKGKHIWTREASETPCSSSSCTQPEIAITESLRCRSFQYGKNELFDSEYLWPNSARTTAVSGIRSWVQGEIIETEATFSSKASSCCSHCSPQNSSRAYFDTYLEVMEERINKQLIETKREAEAVTDEAFTELLKCEKLEVEAMEAIRKVNLFESAHVREVKLRKEAEDALRDTVQEQQKLLNESEEIAGELQMTMRNIALLDSRAHEANRRRDEAADELSLIQESISTLWQEGQQIRRQKTEALRWLERWRSRGQVGAAHCNGVIGFAEELPELAEFSLSDLQNATCNFSNSFKIEQGGYGCIYKGEMLGRTVAIKKFHQHNMQGPLEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLGCKMCGFGLCRLVSEESLLRPSFRLSTEPKGAFTYTDPEFQRTGILTTKSDIYSFGLIILQLLTGRTPVGLAVLVRNAVSCGKLSSILDSSAGEWPSAVAMQLVELGLQCCQQYHRDRPELTPTLVRELEQLHASEERPVPSFFSCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLSHLFLTPNYALRLAIQDWLCKS* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3467 821 Coils Coil 351 371 - -
Gso11g3467 821 Gene3D Transferase(Phosphotransferase) domain 1 550 751 - -
Gso11g3467 821 CDD RING-Ubox_WDSUB1_like 755 796 - -
Gso11g3467 821 PANTHER OS10G0100500 PROTEIN 31 820 - -
Gso11g3467 821 Pfam U-box domain 751 820 IPR003613 GO:0004842|GO:0016567
Gso11g3467 821 Pfam Protein tyrosine and serine/threonine kinase 482 733 IPR001245 GO:0004672|GO:0006468
Gso11g3467 821 SUPERFAMILY Protein kinase-like (PK-like) 461 736 IPR011009 -
Gso11g3467 821 Coils Coil 295 315 - -
Gso11g3467 821 Gene3D Phosphorylase Kinase; domain 1 454 549 - -
Gso11g3467 821 ProSiteProfiles U-box domain profile. 750 821 IPR003613 GO:0004842|GO:0016567
Gso11g3467 821 SMART Ubox_2 754 817 IPR003613 GO:0004842|GO:0016567
Gso11g3467 821 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 38 179 - -
Gso11g3467 821 Coils Coil 386 413 - -
Gso11g3467 821 ProSiteProfiles Protein kinase domain profile. 477 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g3467 821 Gene3D HUPs 27 189 IPR014729 -
Gso11g3467 821 SUPERFAMILY RING/U-box 746 820 - -
Gso11g3467 821 CDD STK_N 41 191 - -
Gso11g3467 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 821 IPR013083 -
Gso11g3467 821 PANTHER OS02G0152300 PROTEIN 31 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3467 Gso-Chr11 50592750 50597436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3467 41 818 U-box Gene Family AT2G45910 37.360 2.38e-171 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gso11g3467 PK_Tyr_Ser-Thr 1.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3467 - - gmx:100788846 1614.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3467 11 50592750 50597436 Gso11g1185 11 10651957 10657761 PCT
Gso11g1185 11 10651957 10657761 Gso11g3467 11 50592750 50597436 PCT