Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3466 ATGGCAGACACTGAGGATATTCAACCACTCGTATGCGATAATGGGACAGGAATGGTTAAGGCTGGTTTTGCTGGAGATGATGCTCCGAGGGCAGTGTTTCCAAGCATTGTTGGTCGGCCACGTCACACCGGTGTGATGGTTGGGATGGGGCAAAAGGATGCATATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATACTAACTCTGAAATATCCCATTGAGCATGGTATTGTCAGTAACTGGGATGACATGGAGAAAATCTGGCATCACACTTTCTACAATGAACTCCGTGTGGCGCCAGAGGAGCACCCCGTTCTCCTCACCGAAGCACCTCTCAACCCAAAGGCTAATCGTGAGAAAATGACCCAAATTATGTTTGAGACCTTCAACACACCTGCTATGTATGTTGCCATCCAGGCTGTTTTATCTCTCTATGCTAGCGGCCGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACTGTGCCCATTTATGAAGGGTATGCCCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGGCGTGACCTCACTGATGCCCTGATGAAAATCCTTACTGAGCGTGGCTATTCCTTCACTACCACAGCCGAGAGAGAAATTGTAAGGGACATGAAGGAAAAGCTGGCATATCTTGCCCTTGATTATGAGCAAGAACTTGAAACTTCAAAAACTAGTTCTGCTGTTGAGAAGAGCTATGAGCTTCCTGATGGACAGGTCATCACCATTGGTGCTGAGCGTTTCCGTTGTCCTGAAGTCCTCTTCCAGCCATCCATGATTGGAATGGAAGCTGTTGGCATTCATGAGACCACATACAATTCAATTATGAAGTGTGATGTTGATATCAGGAAGGACTTGTATGGAAACATAGTCCTCAGTGGTGGTTCTACCATGTTCCCTGGCATTGCTGACAGAATGAGCAAGGAAATCACTGCTTTGGCCCCAAGCAGCATGAAGATCAAGGTGGTTGCTCCACCCGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCGAAGGCAGAGTACGATGAGTCCGGTCCTTCAATTGTACACAGGAAATGCTTTTGA 1134 0.4788 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYLALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3466 377 SMART actin_3 7 377 IPR004000 -
Gso11g3466 377 PANTHER ACTIN 1 376 IPR004000 -
Gso11g3466 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Gso11g3466 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Gso11g3466 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Gso11g3466 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Gso11g3466 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Gso11g3466 377 Gene3D - 10 371 - -
Gso11g3466 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Gso11g3466 377 Gene3D - 140 340 - -
Gso11g3466 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Gso11g3466 377 Pfam Actin 5 377 IPR004000 -
Gso11g3466 377 PRINTS Actin signature 28 37 IPR004000 -
Gso11g3466 377 PRINTS Actin signature 51 62 IPR004000 -
Gso11g3466 377 PRINTS Actin signature 63 85 IPR004000 -
Gso11g3466 377 PRINTS Actin signature 117 130 IPR004000 -
Gso11g3466 377 PRINTS Actin signature 142 161 IPR004000 -
Gso11g3466 377 PRINTS Actin signature 238 254 IPR004000 -
Gso11g3466 377 PANTHER - 1 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3466 Gso-Chr11 50588170 50590712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3466 1 377 Cytoskeleton Gene Families AT3G12110 96.286 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3466 K10355 - gmx:100787265 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0342 15 3068537 3071432 Gso11g3466 11 50588170 50590712 GST
Gso11g3466 11 50588170 50590712 Gso12g0524 12 4683116 4686583 PCT
Gso11g3466 11 50588170 50590712 Gso11g1186 11 10660278 10664028 PCT
Gso12g0524 12 4683116 4686583 Gso11g3466 11 50588170 50590712 PCT
Gso11g1186 11 10660278 10664028 Gso11g3466 11 50588170 50590712 PCT