Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3454 ATGTCTGCGGCTTTGGATATGACCCTCGAAGATATAATTAAGAACAACAAGAAATCTTCCCCCGCCAACACCAGGGGCCGAGGCCGAGCCTCGGGACCCGGACCCGCTCGCCGCCTCCCCAACCGTGCCGCCAATCGCGCCGCACCGTATGCCGCTGCCAAGGCGCCGGAGACAGCTTGGAAACACGATATGTACGCGAACCAGCCAGTGGCCGCGGCGTATCCAGGTGGTCGAGCGTCTTCCATCGAAACAGGGACTAAGCTCTACATTTCCAATTTGGATTATGGCGTTTCCAATGATGATATTAAGGAGTTGTTTCTTGAAGTTGGCGACGTGAAACGGCATATTGTTCATTATGACAGGAGTGGGAGATCCAAGGGTACGGCAGAAGTAGTCTTCTCGCGCCGAGCTGATGCTGTAGCTGCAGTGAAGAGGTACAACAATGTTCAGCTGGATGGGAAACCAATGAAGGTAGAGATTGTGGGGACGAACATCGCTACACATGCTGCACCACCCGCTGTGAATGGAACTTTTGGAAACCCAACTGGAGTTCCTAGAAGTGGACAAGGGAGAAGTGGGTCATTAGGAAGGCCACGTGGTGGGAGTAGAGGTCGTGGCAGCATTCAACGGGGCCGGGGACGTGGAAGAGGAGGTCGTGATGAAAAGGTATCTGCTGAAGATCTTGATGCTGATTTGGAGAAGTATCATGCTGAGGCTATGCAATTAAACTGA 732 0.5301 MSAALDMTLEDIIKNNKKSSPANTRGRGRASGPGPARRLPNRAANRAAPYAAAKAPETAWKHDMYANQPVAAAYPGGRASSIETGTKLYISNLDYGVSNDDIKELFLEVGDVKRHIVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATHAAPPAVNGTFGNPTGVPRSGQGRSGSLGRPRGGSRGRGSIQRGRGRGRGGRDEKVSAEDLDADLEKYHAEAMQLN* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3454 243 SUPERFAMILY RNA-binding domain, RBD 57 163 IPR035979 GO:0003676
Gso11g3454 243 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 242 - -
Gso11g3454 243 MobiDBLite consensus disorder prediction 213 231 - -
Gso11g3454 243 Gene3D - 73 226 IPR012677 -
Gso11g3454 243 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 242 - -
Gso11g3454 243 CDD RRM_THOC4 86 160 - -
Gso11g3454 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 156 IPR000504 GO:0003723
Gso11g3454 243 MobiDBLite consensus disorder prediction 169 231 - -
Gso11g3454 243 SMART rrm1_1 87 159 IPR000504 GO:0003723
Gso11g3454 243 SMART FoP_duplication_2 169 243 IPR025715 -
Gso11g3454 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 163 IPR000504 GO:0003723
Gso11g3454 243 Coils Coil 225 243 - -
Gso11g3454 243 Pfam C-terminal duplication domain of Friend of PRMT1 185 237 IPR025715 -
Gso11g3454 243 MobiDBLite consensus disorder prediction 14 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3454 Gso-Chr11 50459037 50461925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3454 85 160 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 5.54e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3454 K12881 - gmx:100783362 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3454 11 50459037 50461925 Gso12g0537 12 4812681 4816951 PCT
Gso11g3454 11 50459037 50461925 Gso11g1199 11 10821833 10826087 PCT
Gso12g0537 12 4812681 4816951 Gso11g3454 11 50459037 50461925 PCT
Gso11g1199 11 10821833 10826087 Gso11g3454 11 50459037 50461925 PCT