Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3448 ATGAAGAGAGGCAGAGAAGAGGGTGAGTTAGACATGGCTAATTGCTTGATGCTATTGACCAAAGTTGGTGAGAGTGAAACCAATTATCCAATATCAAAGGGTAGAGATGATGGTGATTTCAAGTGCAAGACTTGCAATAGAAGGTTCTCTTCTTTTCAAGCCCTTGGCGGCCACAGAGCAAGTCACAAAAAACCAAAGCTTATGGTCACAGATCTTTCGTGGCATCACGAGTTACCGAATAACCCAACCATGAAACAACCTAGGATGCACCCGTGTCCGATTTGTGGGCTTGAGTTTGCCATTGGACAAGCCTTGGGAGGGCACATGAGAAAGCATAGAAGTGCTATTAATGATGGCTTGTTGTGTGGTAAACCTTCTTCGTTGTCCATCTTGAAGAATTCATCAAAAGATGCTCATGAAAGGTTGAATTTGCGTTTGGACTTGAACTTGACGCCAATGGAGGAGGATGATCTGAAGCTCAACTTAAGGACGCCCGTCCTCAATTGTTTCATTTGA 516 0.438 MKRGREEGELDMANCLMLLTKVGESETNYPISKGRDDGDFKCKTCNRRFSSFQALGGHRASHKKPKLMVTDLSWHHELPNNPTMKQPRMHPCPICGLEFAIGQALGGHMRKHRSAINDGLLCGKPSSLSILKNSSKDAHERLNLRLDLNLTPMEEDDLKLNLRTPVLNCFI* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3448 171 Pfam C2H2-type zinc finger 90 114 - -
Gso11g3448 171 Pfam C2H2-type zinc finger 40 65 - -
Gso11g3448 171 PANTHER ZINC FINGER PROTEIN ZAT5 4 169 - -
Gso11g3448 171 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Gso11g3448 171 SUPERFAMILY beta-beta-alpha zinc fingers 40 112 IPR036236 -
Gso11g3448 171 SMART c2h2final6 90 112 IPR013087 -
Gso11g3448 171 SMART c2h2final6 40 62 IPR013087 -
Gso11g3448 171 ProSitePatterns Zinc finger C2H2 type domain signature. 92 112 IPR013087 -
Gso11g3448 171 Gene3D Classic Zinc Finger 19 115 - -
Gso11g3448 171 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 4 169 - -
Gso11g3448 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3448 Gso-Chr11 50417073 50417805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3448 1 162 C2H2 Transcription Factor Family AT2G28710 46.061 1.61e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g3448 zf-C2H2_6 1.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3448 - - gmx:100781211 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0358 15 3208946 3209752 Gso11g3448 11 50417073 50417805 GST
Gso11g3448 11 50417073 50417805 Gso12g0543 12 4860612 4861492 PCT
Gso11g3448 11 50417073 50417805 Gso11g1205 11 10884145 10886074 PCT
Gso12g0543 12 4860612 4861492 Gso11g3448 11 50417073 50417805 PCT
Gso11g1205 11 10884145 10886074 Gso11g3448 11 50417073 50417805 PCT