Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3445 ATGACCCCCCAGGAAGAACGCCTTGTCTTGGAACTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAATGAGATCAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAGCGAGGAGAAGCTGCATCGTCATCACCAACACCCTCTAGCGTTGATTCCTCAATATCCTCAAACAACCATGCAGTGGATCCACATGCTTCCAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTGATAATGGTGTGATAGCCGCAACCCAAGATCAGGGTCAAAAAGGTGATCAACAAGGGTTGTTCTCTATGGATGATATATGGAAGGATATTGACAATATGTCAGAAGAGAACAACACTACTCTTCAGCCAGTGTCAGTGTATGATGGGCACAGTGAAGAGGGTTGCAACTTCTCTTGCCCACCACAAGTGCCTTCTCCATCATCATGGGAATATTCTTCTTCTGACCCTCTATGGGTGATGGATGAGGAAAGTTTGTTTTGCCCTTTGAGTGAAGAACCATATTTTTCCTGCTATGCACAGGGCACCGTTTTTTTAACCGGCTAA 606 0.4571 MTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQEKKRGEAASSSPTPSSVDSSISSNNHAVDPHASKKAGEESFYDTGGDNGVIAATQDQGQKGDQQGLFSMDDIWKDIDNMSEENNTTLQPVSVYDGHSEEGCNFSCPPQVPSPSSWEYSSSDPLWVMDEESLFCPLSEEPYFSCYAQGTVFLTG* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3445 201 ProSiteProfiles Myb-like domain profile. 1 43 IPR001005 -
Gso11g3445 201 PANTHER TRANSCRIPTION FACTOR MYB48-LIKE ISOFORM X1 1 193 - -
Gso11g3445 201 MobiDBLite consensus disorder prediction 43 111 - -
Gso11g3445 201 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 193 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso11g3445 201 CDD SANT 1 43 IPR001005 -
Gso11g3445 201 Gene3D - 2 69 - -
Gso11g3445 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 47 IPR017930 -
Gso11g3445 201 Pfam Myb-like DNA-binding domain 2 42 IPR001005 -
Gso11g3445 201 MobiDBLite consensus disorder prediction 54 77 - -
Gso11g3445 201 SMART sant 1 45 IPR001005 -
Gso11g3445 201 SUPERFAMILY Homeodomain-like 2 48 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3445 Gso-Chr11 50379084 50380710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3445 1 177 MYB Transcription Factor Family AT3G46130 51.397 1.11e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso11g3445 Myb_DNA-binding 5.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3445 K09422 - gmx:778055 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0360 15 3243440 3245072 Gso11g3445 11 50379084 50380710 GST
Gso12g0545 12 4888640 4890185 Gso11g3445 11 50379084 50380710 PCT
Gso11g1208 11 10938183 10939746 Gso11g3445 11 50379084 50380710 PCT