Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3444 ATGCCGATTTCTAGAATTGCCATTGGAAATTCTTCGGAGTTGAACCAATCTGATGCACTTAAGGCTGCACTAGCTGAGTTCATCTCAATGCTCATCTTTGTTTTTGCCGGGGAAGGCTCTGGAATGGCTTATAATAAGCTGACAAACAATGGTTCAGCAACACCAGCAGGGTTAGTGGCAGCATCACTGTCACATGCCTTTGCACTTTTTGTTGCGGTCTCTGTTGGAGCCAACATTTCTGGCGGTCATGTAAACCCTGCTGTCACTTTCGGTGCCTTTGTTGGTGGCCACATTACCCTCTTTAGAAGCATCTTGTACTGGATTGCTCAGTTACTCGGCTCTGTCGTTGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGACTGGAAACATCTGCATTTGCACTATCTCCTGGGGTGGAAGCAGGGAACGCTCTAGTGTTTGAGATTGTGATGACTTTTGGGTTGGTTTACACGGTGTACGCAACTGCAGTGGATCCAAAGAAGGGTGATCTTGGGATAATTGCTCCAATTGCAATTGGTTTCATCGTTGGTGCGAACATCTTGGCGGGGGGTGCATTTGATGGTGCATCCATGAACCCTGCAGTGTCGTTTGGGCCTGCTGTTGTCAGTTGGACCTGGTCTAACCACTGGGTTTATTGGGTCGGCCCATTTGCTGGTGCTGCCATTGCTGCTGTTGTCTACGAGATTTTCTTCATTAGCCCAAACACTCATGAACAGCTCCCCGTCACAGATTATTAG 759 0.4796 MPISRIAIGNSSELNQSDALKAALAEFISMLIFVFAGEGSGMAYNKLTNNGSATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLFRSILYWIAQLLGSVVACLLLKFATGGLETSAFALSPGVEAGNALVFEIVMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWSNHWVYWVGPFAGAAIAAVVYEIFFISPNTHEQLPVTDY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3444 252 SUPERFAMILY Aquaporin-like 16 243 IPR023271 -
Gso11g3444 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3444 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Gso11g3444 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Gso11g3444 252 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3444 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Gso11g3444 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Gso11g3444 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3444 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3444 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3444 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3444 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso11g3444 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3444 Gso-Chr11 50376323 50377671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3444 1 252 Major Intrinsic Protein MIP AT4G01470 79.365 4.26e-143 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3444 K09873 - gmx:547794 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3444 11 50376323 50377671 Gso12g0546 12 4896634 4897965 PCT
Gso11g3444 11 50376323 50377671 Gso11g1210 11 10946554 10948220 PCT
Gso12g0546 12 4896634 4897965 Gso11g3444 11 50376323 50377671 PCT
Gso11g1210 11 10946554 10948220 Gso11g3444 11 50376323 50377671 PCT